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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | RrC10676_p1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
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Family | bHLH | ||||||||
Protein Properties | Length: 452aa MW: 49009.3 Da PI: 6.2756 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 27.5 | 5.5e-09 | 273 | 321 | 3 | 55 |
HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +h+ +Er RR++i +++ L++l+P + +k Ka +L + ++Y++sLq RrC10676_p1 273 NSHSLAERVRREKISERMKFLQDLVPGC----NKVTGKAVMLDEIINYVQSLQ 321 58*************************9....677*****************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00083 | 3.16E-11 | 268 | 325 | No hit | No description |
SuperFamily | SSF47459 | 2.36E-17 | 268 | 339 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
PROSITE profile | PS50888 | 15.478 | 270 | 320 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 4.6E-17 | 271 | 338 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 4.5E-6 | 273 | 321 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 5.5E-10 | 276 | 326 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 452 aa Download sequence Send to blast |
MDTSEKEEFS GEKRNDNHPA DWRVSGPNPV SAPPFGSYPT ENLITSSCSP SQMMDSFGQT 60 LWYDPTNVQA VGYGGSSSSS CFRGGMDWSL PNLLPPKGNG LFLPNASSFL PPSMAQFPAD 120 SGFIERAARF SLFSDMVNQP LGSPESVGLF VQGQCPSSEV NVGVVAHNNV IRCSEQGSKP 180 NVSEDTQSSG QKGGETSSKG FDSKKRKRNR QSSEAEQSQR SEEEAENNGG DKKEQSPNSP 240 GNKTNSGKQQ GKQASDPKDG YIHVRARRGQ ATNSHSLAER VRREKISERM KFLQDLVPGC 300 NKVTGKAVML DEIINYVQSL QRQVEFLSMK LATVNPQMDF NLEGLLAKDV RELQLRGGSS 360 SATPFPTQNM SMVYPPLPHG FMQQQTLSSV GRTISSPLSP MNGGYKRQET NGWEGDLQNV 420 IHINYGAGDV PSDPEAAAAT ASLPSSNMKV EP |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional activator involved in cell elongation. Regulates the expression of a subset of genes involved in cell expansion by binding to the G-box motif. {ECO:0000269|PubMed:23161888}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK318937 | 0.0 | AK318937.1 Arabidopsis thaliana AT1G68920 mRNA, complete cds, clone: RAFL22-22-I01. | |||
GenBank | AY128299 | 0.0 | AY128299.1 Arabidopsis thaliana At1g68920/T6L1_10 mRNA, complete cds. | |||
GenBank | BT002259 | 0.0 | BT002259.1 Arabidopsis thaliana At1g68920/T6L1_10 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_018446680.1 | 0.0 | PREDICTED: transcription factor bHLH49 | ||||
Refseq | XP_018446685.1 | 0.0 | PREDICTED: transcription factor bHLH49 | ||||
Refseq | XP_018446694.1 | 0.0 | PREDICTED: transcription factor bHLH49 | ||||
Swissprot | Q9CAA9 | 0.0 | BH049_ARATH; Transcription factor bHLH49 | ||||
TrEMBL | A0A3N6QHI2 | 0.0 | A0A3N6QHI2_BRACR; Uncharacterized protein | ||||
STRING | Bo2g062450.1 | 0.0 | (Brassica oleracea) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM5900 | 25 | 44 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G68920.2 | 0.0 | bHLH family protein |
Publications ? help Back to Top | |||
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