PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RrC105_p3
Organism
Raphanus raphanistrum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family MYB
Protein Properties Length: 885aa    MW: 98434.3 Da    PI: 5.0974
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RrC105_p3genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding57.82.5e-183177148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +g WT+eEde l +av+++ g++Wk+Ia+++   Rt+ qc +rwqk+l
        RrC105_p3 31 KGQWTPEEDEVLRKAVERFQGKNWKKIAECVK-DRTDVQCLHRWQKVL 77
                     799****************************9.************986 PP
2Myb_DNA-binding58.61.4e-1883129148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                      +g+W++eEd  ++ +v+++G+  W+tI+++++ gR +kqc++rw+++l
        RrC105_p3  83 KGPWSKEEDNTIIALVEKYGPSKWSTISQHLP-GRIGKQCRERWHNHL 129
                      79******************************.*************97 PP
3Myb_DNA-binding51.81.8e-16135177145
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 
                      +++WT+eE++ l++a++ +G++ W+  ++ ++ gR+++ +k++w+
        RrC105_p3 135 KNAWTQEEELTLIRAHQIYGNK-WAELMKFLP-GRSDNAIKNHWN 177
                      689*******************.*********.***********9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129417.4252677IPR017930Myb domain
SuperFamilySSF466891.44E-182991IPR009057Homeodomain-like
SMARTSM007174.1E-153079IPR001005SANT/Myb domain
PfamPF002491.5E-153177IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.607.3E-223289IPR009057Homeodomain-like
CDDcd001674.32E-143477No hitNo description
PROSITE profilePS5129431.51778133IPR017930Myb domain
SuperFamilySSF466894.49E-3180176IPR009057Homeodomain-like
SMARTSM007171.1E-1782131IPR001005SANT/Myb domain
PfamPF002492.2E-1783129IPR001005SANT/Myb domain
CDDcd001672.05E-1585129No hitNo description
Gene3DG3DSA:1.10.10.609.0E-2790136IPR009057Homeodomain-like
PROSITE profilePS5129418.455134184IPR017930Myb domain
SMARTSM007171.9E-14134182IPR001005SANT/Myb domain
PfamPF002492.6E-14135178IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.6E-21137184IPR009057Homeodomain-like
CDDcd001675.01E-11137177No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003713Molecular Functiontranscription coactivator activity
Sequence ? help Back to Top
Protein Sequence    Length: 885 aa     Download sequence    Send to blast
MKREMKAPNV TEGNLQGKHG RMSGPARRST KGQWTPEEDE VLRKAVERFQ GKNWKKIAEC  60
VKDRTDVQCL HRWQKVLNPE LVKGPWSKEE DNTIIALVEK YGPSKWSTIS QHLPGRIGKQ  120
CRERWHNHLN PGINKNAWTQ EEELTLIRAH QIYGNKWAEL MKFLPGRSDN AIKNHWNSAV  180
KKKLDSYYAS GLLDQCQSSP LVPLQNRSIA SSSSLMHSSG DESSFRQGAD AEESECSQAS  240
TVFSRSQSNN DLLDEVKPAD EELFYVPELP SGLEHQIPNS PSHAESYCPS FEDVEIVVPE  300
ISCEAESSKM YEKLNRANEV ITTTATEDHL QSVSNNVKQD LDLDCPQLFA HNMDRDEKDD  360
QPSLPDLETG IHPQPQTLTT DVECCRVLFP YAMKDSCASS SEQGQNSQNG KGETHAHETG  420
NIPALSWHHS NPEGLDGFPL LYSAEKDSVL LHNDSIQGCD LLGAPALERE TDDTNDGHVT  480
SHGNDGILEQ QELSYIITKD SLKLAPLNNN FSSPSRVNKI YFPIDDKPAE KDKGSLCYEP  540
PRFPSADIPF FSCDLVPPNS DLRQEYSPFG IRQLMNCTST PLRLWDSPCR HDKSPDVILK  600
DAAKSFGGAP SILKKRHREL LSECPDNKSK CASSSEAKED SKETLESGGV SSAKTDQETR  660
RSLVYYNDDV EMQLSSPDKT GSIPDNKVNT VGKDPFTGDS IPLSAITENK TNTAESSFDI  720
IENYSIFDGT PFKKLLDTPS PWKSPLLFGS FLQSPNLPPE ITFEDIGCFM SPGERGYDAI  780
GLMKHLSEHT ATAYADALEV LGNDTPETIL KKRQLNKSIQ GKENQHWPHD QLENRSQVEG  840
RALDFSNCGT PVKANVSSAS PGGYSSPSSY LLKSCRSFNS GHDTI
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h88_C2e-67311846159MYB PROTO-ONCOGENE PROTEIN
1h89_C2e-67311846159MYB PROTO-ONCOGENE PROTEIN
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that binds 5'-AACGG-3' motifs in gene promoters (PubMed:21862669). Transcription activator involved in the regulation of cytokinesis, probably via the activation of several G2/M phase-specific genes transcription (e.g. KNOLLE) (PubMed:17287251, PubMed:21862669). Transcription repressor that regulates organ growth. Binds to the promoters of G2/M-specific genes and to E2F target genes to prevent their expression in post-mitotic cells and to restrict the time window of their expression in proliferating cells (PubMed:26069325). Required for the maintenance of diploidy (PubMed:21862669). {ECO:0000269|PubMed:17287251, ECO:0000269|PubMed:21862669, ECO:0000269|PubMed:26069325}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00466DAPTransfer from AT4G32730Download
Motif logo
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Constant levels during cell cycle. Activated by CYCB1. {ECO:0000269|PubMed:17287251}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018472285.10.0PREDICTED: myb-related protein 3R-1
SwissprotQ9S7G70.0MB3R1_ARATH; Transcription factor MYB3R-1
TrEMBLA0A0D3A2H90.0A0A0D3A2H9_BRAOL; Uncharacterized protein
STRINGBo1g010040.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM46742649
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G32730.10.0Homeodomain-like protein
Publications ? help Back to Top
  1. Kobayashi K, et al.
    Transcriptional repression by MYB3R proteins regulates plant organ growth.
    EMBO J., 2015. 34(15): p. 1992-2007
    [PMID:26069325]