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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
RrC10575_p1 |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
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Family |
SRS |
Protein Properties |
Length: 335aa MW: 37139.5 Da PI: 6.5019 |
Description |
SRS family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
RrC10575_p1 | genome | MSU | View CDS |
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Signature Domain? help Back to Top |
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No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | DUF702 | 225.3 | 1.1e-69 | 104 | 271 | 2 | 154 |
DUF702 2 rsgtasCqdCGnqakkdCaheRCRtCCksrgfdCathvkstWvpaakrrerqqqlaaasskaaasa..aeaaskrkrel..........kskkqsals 87
r+g+++CqdCGnqakkdC h+RCRtCCksrgf+C+thvkstWvpaakrrer +qla++++++++s+ +++++kr re +s ++
RrC10575_p1 104 RQGGMNCQDCGNQAKKDCPHMRCRTCCKSRGFHCQTHVKSTWVPAAKRRERLAQLASLQHHSSSSRetQNSNAKRLREVdgndndddkdHSGGGGSAL 201
7899******************************************************9999888855344444444446777776655566667888 PP
DUF702 88 stklssaeskkelet.sslPeevsseavfrcvrvssvdd..geeelaYqtavsigGhvfkGiLydqGlee 154
+t++++++s++ le+ ++lP+evss+avfrcvrvss+++ +++e+aYqtav+igGh+fkGiLydqG++e
RrC10575_p1 202 ATRVVNTNSNSGLEAiQNLPPEVSSPAVFRCVRVSSIEEdeDDQEYAYQTAVNIGGHIFKGILYDQGPDE 271
889999998888775166*******************98535567***********************97 PP
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Sequence ? help Back to Top |
Protein Sequence Length: 335 aa
Download sequence Send
to blast |
MAGFFYLGGR DNNNKQDHHQ DKSNYLYLYK DEICNTNKGF EIWPPQYFQQ QQEQQQHVTT 60 PTNFYSFGMI PSGSSSSNNN NNRSRGLYFN VVSDHEPGGF TVTRQGGMNC QDCGNQAKKD 120 CPHMRCRTCC KSRGFHCQTH VKSTWVPAAK RRERLAQLAS LQHHSSSSRE TQNSNAKRLR 180 EVDGNDNDDD KDHSGGGGSA LATRVVNTNS NSGLEAIQNL PPEVSSPAVF RCVRVSSIEE 240 DEDDQEYAYQ TAVNIGGHIF KGILYDQGPD EDHHHQLNLL ASTATTTNAE ETAAKTAVTI 300 AGNNNNGLIL DPSSLYPAQL NSFIAGTPFF TPPRD
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Functional Description ? help
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Source |
Description |
UniProt | Transcription activator that binds DNA on 5'-ACTCTAC-3' and promotes auxin homeostasis-regulating gene expression (e.g. YUC genes), as well as genes affecting stamen development, cell expansion and timing of flowering. Synergistically with other SHI-related proteins, regulates gynoecium, stamen and leaf development in a dose-dependent manner, controlling apical-basal patterning. Promotes style and stigma formation, and influences vascular development during gynoecium development. May also have a role in the formation and/or maintenance of the shoot apical meristem (SAM). {ECO:0000269|PubMed:16740146}. |
Annotation --
Nucleotide ? help
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Source |
Hit ID |
E-value |
Description |
GenBank | GU205267 | 0.0 | GU205267.1 Brassica rapa subsp. pekinensis short internode related sequence 5 (SRS5) mRNA, complete cds. |