PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RrC1054_p5
Organism
Raphanus raphanistrum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family NAC
Protein Properties Length: 337aa    MW: 38583 Da    PI: 6.2205
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RrC1054_p5genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM158.92.1e-49101521129
         NAM   1 lppGfrFhPtdeelvveyLkkkvegkk.....lelee...........vikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyW 83 
                 lppGfrFhP+deelv++yL++k++++          +            + e+d++ +ePw+Lp  +k + kewyfFs rd+kyatg r+nrat sgyW
  RrC1054_p5  10 LPPGFRFHPSDEELVCHYLCHKIRARYdhgdvE---DdgagealngatDLVEIDLHVCEPWELPDVAKLNAKEWYFFSFRDRKYATGYRTNRATISGYW 105
                 79**********************999655440...15666667776469**************87788999*************************** PP

         NAM  84 katgkdkevlsk.kgelvglkktLvfykgrapkgektdWvmheyrle 129
                 katgkd++v++  +++lvg++ktLvfy++rap+g kt+W+mhe+rle
  RrC1054_p5 106 KATGKDRTVMDPrTSQLVGMRKTLVFYRNRAPNGIKTTWIMHEFRLE 152
                 ***********967888***************************985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019416.15E-518156IPR003441NAC domain
PROSITE profilePS5100548.83610173IPR003441NAC domain
PfamPF023652.0E-2611151IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 337 aa     Download sequence    Send to blast
MGLKDIGSKL PPGFRFHPSD EELVCHYLCH KIRARYDHGD VEDDGAGEAL NGATDLVEID  60
LHVCEPWELP DVAKLNAKEW YFFSFRDRKY ATGYRTNRAT ISGYWKATGK DRTVMDPRTS  120
QLVGMRKTLV FYRNRAPNGI KTTWIMHEFR LECPNMPPKE SSCMYELCMT WGCMMRWQVF  180
NKGRDLSLQD NDNEHQTQRF EVNDASDLNY NNHSQPLLLS PPSTTIDPPH HHDQWEQLMK  240
QPSRSADHPY HHNCQHQTVA CGWEQMMIGS MSSSSSHGPD HESLLNLLYA DNNNSVNIPD  300
DNYGQNYGKI LLSSDIANLD HYKTCMASSS DGGTYGL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A8e-421015115140Stress-induced transcription factor NAC1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKF7382730.0KF738273.1 Brassica napus NAC transcription factor 74-1 (NAC74-1.1) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018468831.10.0PREDICTED: NAC domain-containing protein 21/22-like
TrEMBLA0A0D3A3R60.0A0A0D3A3R6_BRAOL; Uncharacterized protein
TrEMBLA0A3P6G3290.0A0A3P6G329_BRAOL; Uncharacterized protein
STRINGBo1g017380.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM34362862
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G28530.11e-166NAC domain containing protein 74