PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus

Family

ERF

Protein Properties

Length: 350aa MW: 39518.4 Da PI: 4.3317

Description

ERF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
RrC10281_p1	genome	MSU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	AP2	62.1	1.3e-19	127	176	2	55
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 +++GVr+++ +g+W+AeIrdp + ++r +lg+f taeeAa +++a+ +l+g RrC10281_p1 127 KFRGVRQRP-WGKWAAEIRDPEQ---KRRLWLGTFETAEEAALVYDNAAIRLRG 176 89*****.******732...5***********************99 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:3.30.730.10	1.7E-30	126	184	IPR001471	AP2/ERF domain
PROSITE profile	PS51032	23.868	127	184	IPR001471	AP2/ERF domain
Pfam	PF00847	7.0E-13	127	176	IPR001471	AP2/ERF domain
SuperFamily	SSF54171	1.77E-21	127	185	IPR016177	DNA-binding domain
CDD	cd00018	4.75E-34	127	183	No hit	No description
SMART	SM00380	2.8E-40	127	190	IPR001471	AP2/ERF domain
PRINTS	PR00367	3.1E-10	128	139	IPR001471	AP2/ERF domain
PRINTS	PR00367	3.1E-10	150	166	IPR001471	AP2/ERF domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 350 aa Download sequence Send to blast
MDELQEYMDF RPLKYSEHKT SVTKYTKTSP ETRPDSVKIV RVSVTDPYAT DSSSDEEEEE 60 HDFLFPRRRV RRFVNEIRVE PGRNNDTDVA GGVSTKERKR LSSSPALASN RRRALKVSAT 120 SGQNGRKFRG VRQRPWGKWA AEIRDPEQKR RLWLGTFETA EEAALVYDNA AIRLRGPDAL 180 TNFSIPPEES EPEQLVNVKP ESNITTTTTT SCSESSEDFQ HVSSPTSVLN LQSSEEIQQP 240 FKSAKPEPEI SDAVWWHTGV SSGSGESDDS FMLDTQFLDN YFNESLPEFS MLDQPMGEVF 300 LENDIFGDTF LDGESMMNIG DDEFTTSSIK DIGSVFSEFD DSLISDLLVV

Sequence ? help Back to Top

Protein Sequence Length: 350 aa Download sequence Send to blast

MDELQEYMDF RPLKYSEHKT SVTKYTKTSP ETRPDSVKIV RVSVTDPYAT DSSSDEEEEE  60
HDFLFPRRRV RRFVNEIRVE PGRNNDTDVA GGVSTKERKR LSSSPALASN RRRALKVSAT  120
SGQNGRKFRG VRQRPWGKWA AEIRDPEQKR RLWLGTFETA EEAALVYDNA AIRLRGPDAL  180
TNFSIPPEES EPEQLVNVKP ESNITTTTTT SCSESSEDFQ HVSSPTSVLN LQSSEEIQQP  240
FKSAKPEPEI SDAVWWHTGV SSGSGESDDS FMLDTQFLDN YFNESLPEFS MLDQPMGEVF  300
LENDIFGDTF LDGESMMNIG DDEFTTSSIK DIGSVFSEFD DSLISDLLVV

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
2gcc_A	5e-22	125	185	3	64	ATERF1
3gcc_A	5e-22	125	185	3	64	ATERF1
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Functional Description ? help Back to Top
Source	Description
UniProt	Component of the cytokinin signaling pathway involved in cotyledons, leaves, and embryos development. Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250, ECO:0000269\|PubMed:16832061}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_018474690.1	0.0	PREDICTED: ethylene-responsive transcription factor CRF3-like
Swissprot	Q9FK12	1e-133	CRF3_ARATH; Ethylene-responsive transcription factor CRF3
TrEMBL	A0A3N6RE22	1e-174	A0A3N6RE22_BRACR; Uncharacterized protein
STRING	Bra022643.1-P	1e-173	(Brassica rapa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM2229	25	76

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G53290.1	1e-115	cytokinin response factor 3

Publications ? help Back to Top
Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Raines T, et al. The cytokinin response factors modulate root and shoot growth and promote leaf senescence in Arabidopsis. Plant J., 2016. 85(1): p. 134-47 [PMID:26662515] Jeon J,Cho C,Lee MR,Van Binh N,Kim J CYTOKININ RESPONSE FACTOR2 (CRF2) and CRF3 Regulate Lateral Root Development in Response to Cold Stress in Arabidopsis. Plant Cell, 2016. 28(8): p. 1828-43 [PMID:27432872]