 |
Plant Transcription
Factor Database
|
Transcription Factor Information
|
Basic
Information? help
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| TF ID |
RrC10250_p1 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
|
| Family |
C2H2 |
| Protein Properties |
Length: 381aa MW: 41885.8 Da PI: 8.9215 |
| Description |
C2H2 family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| RrC10250_p1 | genome | MSU | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | zf-C2H2 | 12.4 | 0.00049 | 132 | 155 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHH.T CS
zf-C2H2 1 ykCpdCgksFsrksnLkrHirt.H 23
++C+ Cg+ F+ +L++H H
RrC10250_p1 132 FPCTACGEIFPKTNLLEHHVAIkH 155
89*****************98777 PP
|
| Sequence ? help Back to Top |
| Protein Sequence Length: 381 aa
Download sequence Send
to blast |
MAARKLGSLL RQHFFSLFFL FLGCFFFPKG GDLRQKRRKK KKLRTVTSGS GLSSSWAYLK 60
RVFLSTTRIS KSRNQTHPNG PLTTLTSARS SQNSLVTLVQ PDPETRTENG FSDISSSDSP 120
LFLPLRNNNE IFPCTACGEI FPKTNLLEHH VAIKHAVSEL ADGESSTNIV KIIFKSGWPE 180
QQGGSNKIPA IHRILKIHNS PKILARFEEY REFVKAKAAR SSGGNGRWDD ERCVVDGNEL 240
LRFYCSTFMC NLGQNGNSSL CGHQYCSVCG IVGSGFSPKL DGIATFATGW RGHAAVPEEV 300
EEEFGFMNVK RAMLVCRVVA GRVGCDLIAD DDVDKSGGGY DSLVGQGSGS RSGALLRIDD 360
EELLVFNPRA VLPCFVIVYT V
|
| Nucleic Localization
Signal ? help
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 |
| No. |
Start |
End |
Sequence |
| 1 | 35 | 41 | KRRKKKK |
| 2 | 36 | 42 | RRKKKKL |
| 3 | 37 | 43 | RKKKKLR |
| Annotation --
Nucleotide ? help
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| Source |
Hit ID |
E-value |
Description |
| GenBank | AC232577 | 0.0 | AC232577.1 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrS012H21, complete sequence. |
