PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RrC10230_p1
Organism
Raphanus raphanistrum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family NAC
Protein Properties Length: 560aa    MW: 63319.1 Da    PI: 4.9453
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RrC10230_p1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM682.6e-2181366128
          NAM   6 rFhPtdeelvveyLkkk.vegkkleleevikev.diykvePwdLp..kkvkaeekewyfFskrdkkya...tgkrknr.atksgyWkatgkdkevlsk 95 
                  +F+Pt+ el++  L+++ v+++++++   i+++  +y+ ePw L+  ++v+ +++ew++F++r+k+      +kr++r +++sg+Wk+tg   +v+++
  RrC10230_p1   8 HFKPTNIELLNI-LEARiVRDERCSF---ITDMqSLYEREPWLLQhvRHVTFKDNEWFYFVRRNKRPGmtaDSKRPSRkVAESGMWKTTGLVIQVKNQ 101
                  7*********55.6666155555555...777768*********95336677999*******99986544467899997899**************** PP

          NAM  96 kgelvglkktLvfykg..rapkgektdWvmheyrl 128
                  +g  vg++k + f     + ++g  t W+mhe+ l
  RrC10230_p1 102 DGVIVGCRKNISFKADcdTVKDGITTGWTMHEFIL 136
                  **************543378999**********76 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5100527.6273152IPR003441NAC domain
PfamPF023658.8E-117135IPR003441NAC domain
SuperFamilySSF1019412.22E-248151IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 560 aa     Download sequence    Send to blast
MEGTRKTHFK PTNIELLNIL EARIVRDERC SFITDMQSLY EREPWLLQHV RHVTFKDNEW  60
FYFVRRNKRP GMTADSKRPS RKVAESGMWK TTGLVIQVKN QDGVIVGCRK NISFKADCDT  120
VKDGITTGWT MHEFILDRPW FQEVVLCRIR FFKRKDNAQY APRFLPIVIG RERGDSPVET  180
HQDQGMEQWT GSCSREVASY LASQQIKAQD LNYPMLNGGM MQHQDFGSYG QQHNHIIRQT  240
EQHGQGLGQE TTDSRQVPMM MNQTFNDRQQ WNGYSGSSSA NQDMVPVTQD LMPAQGQQLS  300
VNGSMEQHQD FGSYGQVSGD FLGQQQNHIR GGQASSVSLM GDHQQQCQNL FGGHVTDPSH  360
SAQATEQQQE LNGYFGQYSA QPYDQGMMEN HDFGSSALGF GQNNDLSAPI ELASQQQDLG  420
ENSNLSLTQQ QNKTVPTKTQ QLQRGSVTIN SAAQLHTEAQ DSVPLINQTM EAQATGLPVN  480
QGIHESHGGI VGSPTFSQLY QELLGEEEMD SEMDDIRNDF LNEEWVQKLG KNTPEEEAEL  540
MVDHTNCETF ESFLDSLLSK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1896211e-158AC189621.1 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrH121P05, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013607456.10.0PREDICTED: uncharacterized protein LOC106314055
TrEMBLA0A078G6E50.0A0A078G6E5_BRANA; BnaA09g00440D protein
STRINGBra036304.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM144241018
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G18300.11e-13NAC domain containing protein 88