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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | RrC10018_p1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
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Family | ZF-HD | ||||||||
Protein Properties | Length: 264aa MW: 28508.8 Da PI: 8.1664 | ||||||||
Description | ZF-HD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | ZF-HD_dimer | 102.1 | 3.8e-32 | 52 | 108 | 3 | 58 |
ZF-HD_dimer 3 kvrYkeClkNhAaslGghavDGCgEfmpsegee.gtaaalkCaACgCHRnFHRreve 58 v+YkeClkNhAa +Ggha+DGCgEf+ps++ + +++++l+C ACgCHRnFHRre + RrC10018_p1 52 VVTYKECLKNHAAGIGGHALDGCGEFIPSPSFNaNDPTSLTCDACGCHRNFHRREDD 108 689****************************99899******************976 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
ProDom | PD125774 | 2.0E-25 | 51 | 106 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
Pfam | PF04770 | 7.2E-27 | 53 | 107 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
TIGRFAMs | TIGR01566 | 2.6E-31 | 54 | 106 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
PROSITE profile | PS51523 | 26.382 | 55 | 106 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
SuperFamily | SSF46689 | 1.25E-15 | 167 | 230 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 4.6E-25 | 170 | 229 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01565 | 3.3E-23 | 173 | 229 | IPR006455 | Homeodomain, ZF-HD class |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0044212 | Molecular Function | transcription regulatory region DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 264 aa Download sequence Send to blast |
MDVISTSATI VSDLDSRQPV TEAPTRIQPA KPISFSNGKR NHDHQHHASQ VVVTYKECLK 60 NHAAGIGGHA LDGCGEFIPS PSFNANDPTS LTCDACGCHR NFHRREDDLS NVSAVVPRIE 120 YRPHNRHQLP PPPLPPVGAG SQDDDDPASP PPISSSYMLL ALSGGATAVP VSRKRFRTKF 180 SEFQKGKMFE FAERVGWRMP KADDVDVVGF CREIGVEKSV FKVWMHNNKI PGRGGARRAN 240 GDGGGGGDGR ESVPTNGNVS FSST |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1wh7_A | 9e-20 | 172 | 232 | 16 | 76 | ZF-HD homeobox family protein |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Putative transcription factor. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_018443190.1 | 1e-165 | PREDICTED: zinc-finger homeodomain protein 8 | ||||
Swissprot | Q9LXG0 | 1e-129 | ZHD8_ARATH; Zinc-finger homeodomain protein 8 | ||||
TrEMBL | A0A397XR59 | 1e-150 | A0A397XR59_BRACM; Uncharacterized protein | ||||
STRING | Bra008712.1-P | 1e-140 | (Brassica rapa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM2220 | 25 | 75 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G15210.1 | 1e-118 | homeobox protein 30 |
Publications ? help Back to Top | |||
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