 |
Plant Transcription
Factor Database
|
Transcription Factor Information
|
Basic
Information? help
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| TF ID |
Pta011694 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pinus; Pinus
|
| Family |
HD-ZIP |
| Protein Properties |
Length: 185aa MW: 21499.4 Da PI: 8.7682 |
| Description |
HD-ZIP family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| PUT-157a-Pinus_taeda-138982547 | PU_ref | plantGDB | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | Homeobox | 51.2 | 2.1e-16 | 37 | 92 | 2 | 56 |
T--SS--HHHHHHHHHHHHHSSS--HH.HHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
Homeobox 2 rkRttftkeqleeLeelFeknrypsae.ereeLAkklgLterqVkvWFqNrRakek 56
rk+ +++keq Lee F+++++++ + ++ LAk+l+L rqV vWFqNrRa+ k
Pta011694 37 RKKLRLSKEQSALLEESFREHSTLNPQkQKNALAKQLNLRPRQVEVWFQNRRARTK 92
778899******************97526889**********************98 PP
|
| 2 | HD-ZIP_I/II | 121.7 | 3.8e-39 | 37 | 128 | 1 | 92 |
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLep.erKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelk 92
+kk+rlskeq++lLEesF+e+++L+p ++K++la++L+l+prqv+vWFqnrRARtk+kq+E+d+e+Lkr++++l+een+rL+ke +eLr +lk
Pta011694 37 RKKLRLSKEQSALLEESFREHSTLNPqKQKNALAKQLNLRPRQVEVWFQNRRARTKLKQTEVDCEVLKRCCENLTEENRRLQKELQELR-ALK 128
69***********************945799*********************************************************9.565 PP
|
| Gene Ontology ? help Back to Top |
| GO Term |
GO Category |
GO Description |
| GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
| GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
| GO:0043565 | Molecular Function | sequence-specific DNA binding |
| Sequence ? help Back to Top |
| Protein Sequence Length: 185 aa
Download sequence Send
to blast |
MAVKRERERA FDLEAERDRT CDVSSRTSDE EEIGSTRKKL RLSKEQSALL EESFREHSTL 60
NPQKQKNALA KQLNLRPRQV EVWFQNRRAR TKLKQTEVDC EVLKRCCENL TEENRRLQKE 120
LQELRALKAA PQPCVIGQDN YYMPLPATTL TMCPSCERVA TMENSRSLQF SKSQISQFTQ 180
QSAAC
|
| Nucleic Localization
Signal ? help
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 |
| No. |
Start |
End |
Sequence |
| 1 | 35 | 41 | TRKKLRL |
| 2 | 86 | 94 | RRARTKLKQ |
| Expression --
Description ? help
Back to Top |
| Source |
Description |
| Uniprot | TISSUE SPECIFICITY: Expressed in seedlings, roots, stems, leaf sheaths and blades and panicles. {ECO:0000269|PubMed:17999151}. |
| Uniprot | TISSUE SPECIFICITY: Expressed in seedlings, roots, stems, leaf sheaths and blades and panicles. {ECO:0000269|PubMed:17999151}. |
| Uniprot | TISSUE SPECIFICITY: Expressed in stems, leaf sheaths and blades and panicles. {ECO:0000269|PubMed:17999151}. |
| Functional Description ? help
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| Source |
Description |
| UniProt | Probable transcription factor. {ECO:0000250}. |
| UniProt | Probable transcription factor. {ECO:0000250}. |
| UniProt | Probable transcription factor. {ECO:0000250}. |
| UniProt | Probable transcription factor. {ECO:0000250}. |
