PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

Gene Ontology |

Expression |

Basic Information? help Back to Top

TF ID

Pta010988

Organism

Pinus taeda

Taxonomic ID

3352

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pinus; Pinus

Family

bHLH

Protein Properties

Length: 212aa MW: 24328.5 Da PI: 8.9961

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PUT-157a-Pinus_taeda-22241	PU_ref	plantGDB	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	40.9	3.6e-13	80	133	1	54
CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 ++ +hn++Er+RR+++N+ + +Lr+llP+++ + +kK+s +i+ +YI +L Pta010988 80 KKLSHNANERQRRKNLNELYGKLRSLLPNSTFNMKKKVSNPAIVCGILKYIPQL 133 6789***********************66688899************998 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	13.402	79	133	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	9.80E-9	80	138	No hit	No description
Pfam	PF00010	1.8E-10	80	133	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	7.5E-11	80	147	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	1.28E-13	80	149	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	3.8E-7	85	139	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 212 aa Download sequence Send to blast
XAQSMAMSAL PRPESFESQL LMEGCEYWRE VEYSKPPCTM LEYGEKFFLS GDNVICNSYL 60 PNITDEKGSG FNLSEEVVTK KLSHNANERQ RRKNLNELYG KLRSLLPNST FNMKKKVSNP 120 AIVCGILKYI PQLRRQIKIL SRQRDELLTL RRTSGQEVKT APAEYHASEM LIDKLDFNQS 180 PKCTFVRSMH FCRETRAASN SSDSTWSSTS LF

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Pta.19565	0.0	root

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G56970.1	5e-18	bHLH family protein