PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pta010956
Organism
Pinus taeda
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pinus; Pinus
Family bHLH
Protein Properties Length: 213aa    MW: 24358.8 Da    PI: 8.4255
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PUT-157a-Pinus_taeda-3692PU_refplantGDBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH38.91.5e-122264754
               HHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHH CS
        HLH  7 erErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksL 54
                 ErrRR+++N+ + +Lr l+P+ +      K++Ka+iL  A+eY+ +L
  Pta010956 22 VSERRRRQKMNKLLYTLRALVPNiS------KMDKASILADAIEYVEKL 64
               57*********************66......**************9988 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000834.68E-131369No hitNo description
SuperFamilySSF474591.31E-171479IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088816.2911564IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003539.3E-162170IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.106.1E-182178IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000103.3E-102264IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 213 aa     Download sequence    Send to blast
MELADEHSIL RYKKPKLSKN VVSERRRRQK MNKLLYTLRA LVPNISKMDK ASILADAIEY  60
VEKLKQQVER AESDVQSTNV SALSADPRVE ETDSLAVSLD AANRYGSDRK YHVQVEVRVE  120
ESIVEVRIRC KQEHGILFHL TRALETLPFQ LKNFTFSTLN EYLLLLNVVL QVDHGFPAMS  180
DYGLKQSIED SFGKQGLILT SGNSNGHLWQ ELK
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5gnj_A3e-1421741063Transcription factor MYC2
5gnj_B3e-1421741063Transcription factor MYC2
5gnj_E3e-1421741063Transcription factor MYC2
5gnj_F3e-1421741063Transcription factor MYC2
5gnj_G3e-1421741063Transcription factor MYC2
5gnj_I3e-1421741063Transcription factor MYC2
5gnj_M3e-1421741063Transcription factor MYC2
5gnj_N3e-1421741063Transcription factor MYC2
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pta.172580.0needle| root| shoot
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G57150.32e-18bHLH family protein