PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

Gene Ontology |

Expression |

Basic Information? help Back to Top

TF ID

Pta010896

Organism

Pinus taeda

Taxonomic ID

3352

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pinus; Pinus

Family

bHLH

Protein Properties

Length: 215aa MW: 23954.1 Da PI: 9.0374

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PUT-157a-Pinus_taeda-56519	PU_ref	plantGDB	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	49.7	6.7e-16	42	88	4	55
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 hn E+rRR+riN+++ L+ l+P++ K +Ka++L +A+eY+k+Lq Pta010896 42 VHNLSEKRRRNRINEKMKALQNLIPNS-----NKTDKASMLDEAIEYLKKLQ 88 6***********************7.....5****************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:4.10.280.10	2.3E-20	35	97	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	1.96E-20	35	97	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profile	PS50888	17.885	38	87	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	5.57E-16	41	92	No hit	No description
Pfam	PF00010	2.4E-13	42	88	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	1.4E-17	44	93	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 215 aa Download sequence Send to blast
XVLMGTKDIE CQSQKAREDS GENFKQCSTG TSSSKRSRAA EVHNLSEKRR RNRINEKMKA 60 LQNLIPNSNK TDKASMLDEA IEYLKKLQLQ VQMLSARSGI DLSSMRWLAQ MPHLQIQQMP 120 KACMAIDQHA GVPISMPVGS GLINTNQGSE KRPLPLHDLY NSGALCNTAI PINLSSVRID 180 DHHSCKMDHP QGHFTLPQLP TTTQEVHSAL SLQEK

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Pta.34582	0.0	root\| shoot

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	NP_001292767.1	5e-44	transcription factor bHLH23
TrEMBL	A9NSU4	1e-146	A9NSU4_PICSI; Uncharacterized protein
STRING	ERN17950	5e-42	(Amborella trichopoda)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G09530.2	2e-34	phytochrome interacting factor 3