PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

Expression |

Basic Information? help Back to Top

TF ID

Pta010627

Organism

Pinus taeda

Taxonomic ID

3352

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pinus; Pinus

Family

Trihelix

Protein Properties

Length: 225aa MW: 25470.8 Da PI: 7.3425

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
gnl\|UG\|Pta#S25642203	PU_ref	Unigene	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	39.4	1.6e-12	160	224	1	61
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeev....skkmrergferspkqCkekwenlnkry 61 +W+++ + +L++a++e+ +l+rg+l++ +Weev s+++++++ +s +qCk+k +nl+kry Pta010627 160 EWSDSAIGCLLDAYTEKYVKLNRGNLRGRDWEEVacivSERCERQKSAKSIEQCKNKVDNLKKRY 224 5******************************822225666********************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF13837	1.8E-14	158	224	No hit	No description

Sequence ? help Back to Top
Protein Sequence Length: 225 aa Download sequence Send to blast
DFVMLEAAHS HQAHQLPHHH HHHPQAFQSP QYLPNKQQQT LPHGHIDAHG INSVESRKKI 60 PGEDEDYSDA AFCSQGDPKC SPDFVQEIGP HHHHHHHECF GEEGFRTGDD VKPSGAKSRS 120 RAGQGKMKDS REELSDGGTY YHKKPKGGGG GGDYKKDREE WSDSAIGCLL DAYTEKYVKL 180 NRGNLRGRDW EEVACIVSER CERQKSAKSI EQCKNKVDNL KKRYX

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Pta.13413	0.0	root\| xylem

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010243329.1	4e-53	PREDICTED: uncharacterized protein LOC104587412 isoform X1
Refseq	XP_010243337.1	4e-53	PREDICTED: uncharacterized protein LOC104587412 isoform X2
TrEMBL	A0A0D6R6P9	7e-86	A0A0D6R6P9_ARACU; Uncharacterized protein
STRING	XP_010243329.1	2e-52	(Nelumbo nucifera)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G10030.2	7e-31	Trihelix family protein