 |
Plant Transcription
Factor Database
|
Transcription Factor Information
|
Basic
Information? help
Back to Top |
| TF ID |
Pta010214 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pinus; Pinus
|
| Family |
DBB |
| Protein Properties |
Length: 239aa MW: 26050.7 Da PI: 4.5431 |
| Description |
DBB family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| gnl|UG|Pta#S26630982 | PU_ref | Unigene | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | zf-B_box | 17.3 | 1e-05 | 3 | 34 | 4 | 36 |
zf-B_box 4 rkCpeHeekelqlfCedCqqllCedClleeHkg 36
++C+ ++e + + +C+ + lC C ++H g
Pta010214 3 TMCDFCGEIRSTVYCKADAASLCLPCDGQIH-G 34
58******99*******************99.4 PP
|
| 2 | zf-B_box | 19.6 | 1.9e-06 | 47 | 87 | 5 | 42 |
zf-B_box 5 kCpeHeekelqlfCedCqqllCedClleeHkg...Htvvpl 42
C+ ++ +++ + C++ + +C++C ++H++ H+++++
Pta010214 47 LCDGCSVEPAAFSCNNHKLSFCHNCDRQSHSNapqHKRKSI 87
7*****************************989***99876 PP
|
| Sequence ? help Back to Top |
| Protein Sequence Length: 239 aa
Download sequence Send
to blast |
MGTMCDFCGE IRSTVYCKAD AASLCLPCDG QIHGANALSK RHLRTLLCDG CSVEPAAFSC 60
NNHKLSFCHN CDRQSHSNAP QHKRKSISYY TGCPSPAELA ELWNCELDRQ GGDDKQGSSV 120
PGTRWGNSGK EDVSLETLLA SGIDVGFTQK FGPWMEPSVS SKVGLPPSSQ RNSNVNTRIF 180
DSEGSEGTMK LWDQNMQDLG ICADDDCCDA LNMSDVNLIF ENYEDIFGGP QVESSSMFX
|
| Best hit in Arabidopsis thaliana ? help
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| Hit ID |
E-value |
Description |
| AT5G48250.1 | 5e-40 | B-box type zinc finger protein with CCT domain |
