PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

Gene Ontology |

Basic Information? help Back to Top

TF ID

Pta009970

Organism

Pinus taeda

Taxonomic ID

3352

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pinus; Pinus

Family

Trihelix

Protein Properties

Length: 247aa MW: 28350.1 Da PI: 9.5431

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PUT-157a-Pinus_taeda-7144	PU_ref	plantGDB	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	64.2	2.8e-20	150	228	2	85
trihelix 2 WtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdql 85 W++ evl+Li++r em+ r+ +++++++lWee ++ + ++g++r kqC+ekw++l yk + +g++++ ++ +yf +l Pta009970 150 WKRGEVLQLIKLRGEMDGRFANSARRAALWEELADMLGRQGVKRDGKQCREKWDKLMAAYKDVIDGKREE--GD---LSYFVEL 228 *****************************************************************99984..33...4566666 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50090	8.153	142	206	IPR017877	Myb-like domain
Gene3D	G3DSA:1.10.10.60	2.9E-5	143	206	IPR009057	Homeodomain-like
Pfam	PF13837	1.8E-16	148	230	No hit	No description
CDD	cd12203	5.04E-21	148	212	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 247 aa Download sequence Send to blast
XLGISGREMY ENRDTDEDDE DLLLEKPYFK KRKRCGKYVP VADIEAVKTL LEAVITRQQR 60 FFKELLDSLE RKEQMREQLR QEREDKWRAE ERAHRNVFNN AMILLAQKLL GERGAAAVET 120 AMVNSAAGAV VSASDTLRQG SGPKKRSKNW KRGEVLQLIK LRGEMDGRFA NSARRAALWE 180 ELADMLGRQG VKRDGKQCRE KWDKLMAAYK DVIDGKREEG DLSYFVELRA IVGGRPDEGK 240 VQIESMP

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_024395857.1	8e-85	trihelix transcription factor GTL1-like
TrEMBL	A0A0D6QU72	1e-107	A0A0D6QU72_ARACU; Uncharacterized protein
STRING	PP1S224_109V6.1	3e-84	(Physcomitrella patens)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G63420.1	2e-12	Trihelix family protein