PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

Gene Ontology |

Basic Information? help Back to Top

TF ID

Pta009936

Organism

Pinus taeda

Taxonomic ID

3352

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pinus; Pinus

Family

Trihelix

Protein Properties

Length: 248aa MW: 28747.8 Da PI: 5.3824

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PUT-157a-Pinus_taeda-73986	PU_ref	plantGDB	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	70	4.6e-22	41	120	2	86
trihelix 2 WtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 Wt+qe+l Li++r+e e r+ r+ +k lW+e+s +++++ + r ++qC++kwe+l yk++++g k+r ++ p+fd+l+ Pta009936 41 WTRQETLRLIRLRSEFEPRFARSGRKSELWDEISMALQQESICRDSQQCRDKWEKLTAGYKEVRDGIKNR--QD---NPFFDELQ 120 ********************************************************************97..34...48999986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50090	8.246	33	97	IPR017877	Myb-like domain
Gene3D	G3DSA:1.10.10.60	5.9E-5	34	97	IPR009057	Homeodomain-like
SMART	SM00717	0.0046	37	99	IPR001005	SANT/Myb domain
CDD	cd12203	4.49E-23	39	104	No hit	No description
Pfam	PF13837	2.1E-18	39	120	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 248 aa Download sequence Send to blast
AGDPSLLQNA TFGRMSTGIF PETEDEKKQR QQQHKKRSKN WTRQETLRLI RLRSEFEPRF 60 ARSGRKSELW DEISMALQQE SICRDSQQCR DKWEKLTAGY KEVRDGIKNR QDNPFFDELQ 120 PLLSARGAAA KVKDGAEPAA VGVTNGGDSK TDEEEGHGEG EGEGEEETED GSPPGKRRCR 180 YWTGTGTNNL DAVLENLFDR QQKFFRDLLD SMERREQMRE QIRQEKEDRW RAEERAQRCS 240 MSEAMIRL

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_024529458.1	3e-75	trihelix transcription factor GTL1
TrEMBL	H9M905	3e-93	H9M905_PINRA; Uncharacterized protein (Fragment)
TrEMBL	H9V2N5	3e-93	H9V2N5_PINTA; Uncharacterized protein (Fragment)
STRING	EFJ08922	1e-73	(Selaginella moellendorffii)
STRING	EFJ29776	8e-74	(Selaginella moellendorffii)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G33240.1	1e-12	GT-2-like 1