PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pta009918
Organism
Pinus taeda
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pinus; Pinus
Family NAC
Protein Properties Length: 249aa    MW: 28534.5 Da    PI: 8.8599
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
gnl|UG|Pta#S26642034PU_refUnigeneView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM137.21.1e-42201462128
        NAM   2 ppGfrFhPtdeelvveyLkkkvegkk.leleevikevdiykvePwdLp.kkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskkgel 99 
                 pGfrF Pt+eelv +yLk++v+g + l+++ +i+++d+y+++Pw+Lp  + + +e++w+fF++r++k+    r++r t sgyWkatg+d+++ ++  + 
  Pta009918  20 IPGFRFYPTEEELVGFYLKNRVQGGHqLNFDIIIPTLDMYQYDPWELPgLANDVGERQWFFFVPRESKKC--ARPTRLTVSGYWKATGSDRAIRNELLQC 117
                69*********************9985666556***************555566999********99875..7**********************99999 PP

        NAM 100 vglkktLvfykgrapkgektdWvmheyrl 128
                +glkktLvfykgrap g++++W+m+eyr+
  Pta009918 118 IGLKKTLVFYKGRAPLGKRSEWIMNEYRM 146
                ***************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019412.88E-4511168IPR003441NAC domain
PROSITE profilePS5100550.2419168IPR003441NAC domain
PfamPF023656.4E-2421146IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 249 aa     Download sequence    Send to blast
MAVLEEMYND GAVKGELTVI PGFRFYPTEE ELVGFYLKNR VQGGHQLNFD IIIPTLDMYQ  60
YDPWELPGLA NDVGERQWFF FVPRESKKCA RPTRLTVSGY WKATGSDRAI RNELLQCIGL  120
KKTLVFYKGR APLGKRSEWI MNEYRMPDLT SSLPKKKMDM VVCRIYRKAA SQKLMEQRAK  180
PDRFEKENLV ALAGNECEEK NFHSINLACS SQSIPMADAK VPPSNYNGNE KGVSYSNVPK  240
MYNEASQLX
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A4e-401617114168NO APICAL MERISTEM PROTEIN
1ut4_B4e-401617114168NO APICAL MERISTEM PROTEIN
1ut7_A4e-401617114168NO APICAL MERISTEM PROTEIN
1ut7_B4e-401617114168NO APICAL MERISTEM PROTEIN
4dul_A4e-401617114168NAC domain-containing protein 19
4dul_B4e-401617114168NAC domain-containing protein 19
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator that binds sequence-specific DNA motifs. Involved in stress response. Plays a positive role in drought and salt stress tolerance through the modulation of abscisic acid-mediated signaling. {ECO:0000269|PubMed:26834774}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by drought stress, salt stress and abscisic acid (ABA). {ECO:0000269|PubMed:26834774}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008791987.11e-61NAC domain-containing protein 22-like
SwissprotQ10S654e-57NAC22_ORYSJ; NAC domain-containing protein 22
TrEMBLA0A075M5N59e-97A0A075M5N5_9SPER; NAC domain protein
STRINGXP_008791987.14e-61(Phoenix dactylifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G17040.11e-59NAC domain containing protein 36
Publications ? help Back to Top
  1. Hong Y,Zhang H,Huang L,Li D,Song F
    Overexpression of a Stress-Responsive NAC Transcription Factor Gene ONAC022 Improves Drought and Salt Tolerance in Rice.
    Front Plant Sci, 2016. 7: p. 4
    [PMID:26834774]