PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

3D Structure |

Gene Ontology |

Basic Information? help Back to Top

TF ID

Pta009809

Organism

Pinus taeda

Taxonomic ID

3352

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pinus; Pinus

Family

G2-like

Protein Properties

Length: 252aa MW: 27889.6 Da PI: 8.1643

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PUT-157a-Pinus_taeda-34564	PU_ref	plantGDB	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	104.2	7.5e-33	60	115	1	56
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRla 56 k+r++W+peLH++Fv+a++qLGGs++AtPk+i+elmkv+gLt+++vkSHLQkYRl+ Pta009809 60 KARRCWSPELHRKFVNALQQLGGSQVATPKQIRELMKVDGLTNDEVKSHLQKYRLH 115 68****************************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF46689	2.19E-18	57	118	IPR009057	Homeodomain-like
PROSITE profile	PS51294	14.006	57	117	IPR017930	Myb domain
Gene3D	G3DSA:1.10.10.60	8.4E-30	57	118	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	3.6E-27	60	115	IPR006447	Myb domain, plants
Pfam	PF00249	6.4E-8	62	113	IPR001005	SANT/Myb domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 252 aa Download sequence Send to blast
XLGLSSAEPE ETRHHGGLNN NKRCINEEGD QNEGCIVPCN RNMSSTDSHT PQQLGQTQRK 60 ARRCWSPELH RKFVNALQQL GGSQVATPKQ IRELMKVDGL TNDEVKSHLQ KYRLHTRRLP 120 SSGCPQAMGT VTQAPQLVVL GGIWVPPEYA THHGHAAPEL YTALPNIASQ SHAARYYRQR 180 QPAIDGNSLQ EFCTSYSRNH VESSSQPQSD GSPQSSSSMS MEADQDGKSG SQSFHGSWKE 240 KEMGNFVRAP QL

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6j4r_A	5e-15	60	113	1	54	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B	5e-15	60	113	1	54	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C	5e-15	60	113	1	54	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D	5e-15	60	113	1	54	Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010049950.1	9e-52	PREDICTED: myb family transcription factor EFM isoform X2
TrEMBL	A0A059CX25	2e-50	A0A059CX25_EUCGR; Uncharacterized protein
STRING	evm.model.supercontig_127.55	1e-50	(Carica papaya)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G03500.1	1e-47	G2-like family protein