PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

Gene Ontology |

Expression |

Basic Information? help Back to Top

TF ID

Pta009542

Organism

Pinus taeda

Taxonomic ID

3352

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pinus; Pinus

Family

HD-ZIP

Protein Properties

Length: 261aa MW: 29319 Da PI: 7.7385

Description

HD-ZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
gnl\|UG\|Pta#S15797996	PU_unref	Unigene	View CDS
PUT-157a-Pinus_taeda-72482548	PU_ref	plantGDB	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	59.4	5.6e-19	187	241	2	56
T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 rk+ +++keq Lee F++n+ ++ ++++ LAkkl+L rqV vWFqNrRa+ k Pta009542 187 RKKLRLSKEQSALLEESFKENSSLNPKQKQALAKKLNLRPRQVEVWFQNRRARXK 241 778899***********************************************98 PP
2	HD-ZIP_I/II	107.7	8.6e-35	187	258	1	72
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkrayda 72 +kk+rlskeq++lLEesF+e++ L+p++K++la++L+l+prqv+vWFqnrRAR k+kq+E+d+e+Lkr+++ Pta009542 187 RKKLRLSKEQSALLEESFKENSSLNPKQKQALAKKLNLRPRQVEVWFQNRRARXKLKQTEVDCEFLKRCCEX 258 69********************************************************************96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF04618	5.8E-10	29	137	IPR006712	HD-ZIP protein, N-terminal
SuperFamily	SSF46689	2.44E-18	181	244	IPR009057	Homeodomain-like
PROSITE profile	PS50071	17.67	183	243	IPR001356	Homeobox domain
SMART	SM00389	4.3E-17	185	247	IPR001356	Homeobox domain
CDD	cd00086	8.47E-18	187	244	No hit	No description
Gene3D	G3DSA:1.10.10.60	9.2E-18	187	241	IPR009057	Homeodomain-like
Pfam	PF00046	2.8E-16	187	241	IPR001356	Homeobox domain
PROSITE pattern	PS00027	0	218	241	IPR017970	Homeobox, conserved site

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 261 aa Download sequence Send to blast
CLFLSSLLHH QSIFPWRFYI LKKQMGMDME DCNTGLGLGM SIGLGMNLMR EDLQSHRHHV 60 NGPPVQLDLL PLAPVLPSRD LPWGKTSPGT DGERSAGESK ATVPRRIDVN KLPASCYYNE 120 DTGTINVSSP NSALSSFHVD SGGAINAESS CYGMSVKRER EATEELEAER ACSRVSDEEA 180 DQEGGTRKKL RLSKEQSALL EESFKENSSL NPKQKQALAK KLNLRPRQVE VWFQNRRARX 240 KLKQTEVDCE FLKRCCEXXX X

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	185	191	TRKKLRL
2	235	243	RRARXKLKQ

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Pta.11488	0.0	root\| shoot\| xylem

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_018848896.1	1e-57	PREDICTED: homeobox-leucine zipper protein HOX11 isoform X1
TrEMBL	A9NKN4	1e-164	A9NKN4_PICSI; Uncharacterized protein
STRING	Lus10004161	3e-57	(Linum usitatissimum)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G17460.1	9e-34	Homeobox-leucine zipper protein 4 (HB-4) / HD-ZIP protein