PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pinus; Pinus

Family

NAC

Protein Properties

Length: 263aa MW: 28887.3 Da PI: 6.3074

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PUT-157a-Pinus_taeda-8849	PU_ref	plantGDB	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	154.2	5.7e-48	15	144	2	128
NAM 2 ppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk....kg 97 +GfrFhPtdeel+++yL+kkv++++l++ +i+++d y+++PwdLp+k+ +e+ewyfFs+rd++y++g r+nra+ sgyWkatg+d +++s + Pta009482 15 LVGFRFHPTDEELITHYLEKKVSSSPLPA-PIIADIDPYQHDPWDLPAKAFFGENEWYFFSRRDHEYPSGARPNRAAGSGYWKATGSDIPIVSMsgssSP 113 68************************9.88***********8777899**********************************99655555 PP NAM 98 elvglkktLvfykgrapkgektdWvmheyrl 128 ++vg+kk+Lvfykg+ +g+ t+W+mhey l Pta009482 114 RKVGVKKSLVFYKGKPAEGVMTNWIMHEYYL 144 56*************************87 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	1.44E-58	10	168	IPR003441	NAC domain
PROSITE profile	PS51005	55.21	14	169	IPR003441	NAC domain
Pfam	PF02365	6.9E-26	16	143	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 263 aa Download sequence Send to blast
MEGVAFQQQA VPELLVGFRF HPTDEELITH YLEKKVSSSP LPAPIIADID PYQHDPWDLP 60 AKAFFGENEW YFFSRRDHEY PSGARPNRAA GSGYWKATGS DIPIVSMSGS SSPRKVGVKK 120 SLVFYKGKPA EGVMTNWIMH EYYLAETLPT QKNGSAPLDD WVLCRLFQRL NHSPGMLSCS 180 QLEVPSPSAT DVQRSRQKPA IPKLGSFSRV PLNEGPSVEN LPSHATSDAN NAAVSSAEST 240 SSPQVVPHPL NSSESGSDSS MNW

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	1e-61	17	169	20	165	NO APICAL MERISTEM PROTEIN
1ut4_B	1e-61	17	169	20	165	NO APICAL MERISTEM PROTEIN
1ut7_A	1e-61	17	169	20	165	NO APICAL MERISTEM PROTEIN
1ut7_B	1e-61	17	169	20	165	NO APICAL MERISTEM PROTEIN
3swm_A	1e-61	17	169	23	168	NAC domain-containing protein 19
3swm_B	1e-61	17	169	23	168	NAC domain-containing protein 19
3swm_C	1e-61	17	169	23	168	NAC domain-containing protein 19
3swm_D	1e-61	17	169	23	168	NAC domain-containing protein 19
3swp_A	1e-61	17	169	23	168	NAC domain-containing protein 19
3swp_B	1e-61	17	169	23	168	NAC domain-containing protein 19
3swp_C	1e-61	17	169	23	168	NAC domain-containing protein 19
3swp_D	1e-61	17	169	23	168	NAC domain-containing protein 19
4dul_A	1e-61	17	169	20	165	NAC domain-containing protein 19
4dul_B	1e-61	17	169	20	165	NAC domain-containing protein 19
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Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Pta.1296	0.0	cone\| embryo\| root\| xylem

Expression -- Description ? help Back to Top
Source	Description
Uniprot	DEVELOPMENTAL STAGE: Up-regulated during anther and flower development and leaf senescence. {ECO:0000269\|PubMed:22278768}.
Uniprot	TISSUE SPECIFICITY: Highest expression in stamens. Expressed in leaves. {ECO:0000269\|PubMed:18813954, ECO:0000269\|PubMed:22278768}.

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor of the NAC family associated with male fertility. Involved in anther development, but not in senescence. Reduced expression of NAC5 via RNAi leads to male-sterility. {ECO:0000269\|PubMed:22278768}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Up-regulated by drought, salt and cold treatments. {ECO:0000269\|PubMed:18813954}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_019453752.1	2e-72	PREDICTED: NAC transcription factor 56-like
Swissprot	Q8H4S4	1e-68	NAC10_ORYSJ; NAC domain-containing protein 10
TrEMBL	D5ABS0	1e-115	D5ABS0_PICSI; Uncharacterized protein
STRING	XP_004293567.1	7e-70	(Fragaria vesca)

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764]