PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pta008995
Organism
Pinus taeda
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pinus; Pinus
Family MYB_related
Protein Properties Length: 278aa    MW: 30868.2 Da    PI: 7.7837
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PUT-157a-Pinus_taeda-47807PU_refplantGDBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding28.43.9e-09185234147
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT...TTS-HHHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmg...kgRtlkqcksrwqky 47 
                      r ++T  E e lv+av++lG+g+W+ I  +     k+Rt  ++k++w ++
        Pta008995 185 RRPFTVAEVEVLVQAVEKLGTGRWREIKLHAFdhaKHRTYVDLKDKWKTL 234
                      679****************************99**************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129417.204180239IPR017930Myb domain
SuperFamilySSF466892.69E-17182276IPR009057Homeodomain-like
SMARTSM007175.7E-8184237IPR001005SANT/Myb domain
PfamPF002495.2E-6185234IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.1E-11185235IPR009057Homeodomain-like
CDDcd116603.17E-19186236No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 278 aa     Download sequence    Send to blast
MEALINLLEG GFQVQILLHG MKVTDENATL IQVSTSHPEK LETVGFMLEP NPIPSSSTGA  60
DDPLFMLSHA ASRTSSMYPK ASCSGTSIDV EVNKGLIDGS CSETNGMFNA DGAQMAGCQI  120
QKVDINQWVM SESDLIVSSS HPQAVSYSGA LVVHPSVVDD SNQGLTLVPM RHRSRRADIS  180
KRRLRRPFTV AEVEVLVQAV EKLGTGRWRE IKLHAFDHAK HRTYVDLKDK WKTLVHTATI  240
APHQRRGEPV PLELLDRVIR AHSYWTKRQT NQMVNHSL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2juh_A4e-511692751107Telomere binding protein TBP1
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pta.193900.0root| shoot
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006827448.23e-82telomere repeat-binding protein 5
RefseqXP_020527197.13e-82telomere repeat-binding protein 5
RefseqXP_020527201.13e-82telomere repeat-binding protein 5
TrEMBLW1NI316e-81W1NI31_AMBTC; Uncharacterized protein
STRINGERM948641e-81(Amborella trichopoda)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G07540.12e-50TRF-like 2