PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pta008133
Organism
Pinus taeda
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pinus; Pinus
Family bHLH
Protein Properties Length: 312aa    MW: 33997.9 Da    PI: 7.4622
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PUT-157a-Pinus_taeda-46063PU_refplantGDBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH283.9e-09157204455
                HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
        HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                +h+ +Er RR++i +++  L++l+P +    sk   Ka +L + ++Y++sLq
  Pta008133 157 SHSLAERVRREKISERMKFLQDLVPGC----SKVTGKAVMLDEIINYVQSLQ 204
                8*************************9....556*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474592.75E-17151222IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000839.61E-11151208No hitNo description
PROSITE profilePS5088815.669153203IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.104.2E-17153221IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.9E-6157204IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003537.7E-10159209IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 312 aa     Download sequence    Send to blast
XRLSRSSTPV STDDMKQRLA TSGNESDEAE LSTGREESSC SDQIAGREPG SKTSNEINGR  60
KRRALSKAKA KDTPSVVACS GGRETKSLEA DESPTKRYKV AEAGSNEKDD AKSKAEQSTI  120
VSTGESSPKQ TKDIVKTPEP PKDYIHVRAR RGQATDSHSL AERVRREKIS ERMKFLQDLV  180
PGCSKVTGKA VMLDEIINYV QSLQRQVEFL SMKLATVNPR LDFNMDGIIA KDMLQSHSSS  240
PRMLFATDPT AAFPQLLPPQ QGPVQVGVTC GTEGHRMGHP VEGALXXXMN PQPPCIDGYG  300
DSIPXXAXXX DE
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pta.46011e-54root| xylem
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006848450.11e-100transcription factor bHLH78
TrEMBLB8LLM20.0B8LLM2_PICSI; Uncharacterized protein
STRINGERN100311e-100(Amborella trichopoda)