PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

3D Structure |

Gene Ontology |

Publication

Basic Information? help Back to Top

TF ID

Pta008052

Organism

Pinus taeda

Taxonomic ID

3352

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pinus; Pinus

Family

TALE

Protein Properties

Length: 316aa MW: 35407.3 Da PI: 6.5239

Description

TALE family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PUT-157a-Pinus_taeda-80860	PU_ref	plantGDB	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	30	8.8e-10	124	161	19	54
HHH..SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS Homeobox 19 Fek..nrypsaeereeLAkklgLterqVkvWFqNrRak 54 Fe ++yp+ +++ LA+++gLt +qV++WF N R + Pta008052 124 FEHflHPYPKDADKHMLARQTGLTRNQVSNWFINARVR 161 664459******************************88 PP
2	BELL	105.9	2.6e-34	1	58	15	72
BELL 15 lleeVdkrYkqyveqlqtvissFeavaglgsakpYtslAlkaiSrhFrcLkdaiaeqi 72 +l+eVd+rY+qy++q+q+v+ssFea+ag+g+ak YtslAl++iSrhFrcL+dai++qi Pta008052 1 MLDEVDQRYRQYYHQMQIVVSSFEAAAGYGAAKTYTSLALQTISRHFRCLRDAISGQI 58 9********************************************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF07526	2.7E-29	1	55	IPR006563	POX domain
SMART	SM00574	1.2E-6	1	56	IPR006563	POX domain
PROSITE profile	PS50071	12.179	102	165	IPR001356	Homeobox domain
CDD	cd00086	9.63E-12	105	166	No hit	No description
SMART	SM00389	8.1E-9	105	169	IPR001356	Homeobox domain
SuperFamily	SSF46689	2.82E-17	107	172	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	4.4E-29	108	171	IPR009057	Homeodomain-like
Pfam	PF05920	1.4E-18	122	161	IPR008422	Homeobox KN domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 316 aa Download sequence Send to blast
MLDEVDQRYR QYYHQMQIVV SSFEAAAGYG AAKTYTSLAL QTISRHFRCL RDAISGQIRL 60 TSKSLGEEDS TLSGKGETSR LRFVDQQLRQ QRALQQLGMI QQHAWRPQRG LPERSVSVLR 120 AWLFEHFLHP YPKDADKHML ARQTGLTRNQ VSNWFINARV RLWKPMVEEM YVEETKEAEV 180 DHGSNDKTGK ESGEKKEDAL SKEGAAGNNG NIHEQQSGKI SKLDNIAQDG GADEKPAGVP 240 KSENASNLIN VRNQSFGMGG TSDSQIFNET ENEGIRQGQL KKARNGTQEC TSLLSPNMSI 300 EVDLKSDETN SGEFGD

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
3k2a_A	2e-16	111	169	5	63	Homeobox protein Meis2
3k2a_B	2e-16	111	169	5	63	Homeobox protein Meis2
4xrs_A	2e-16	111	168	1	58	Homeobox protein Meis1
4xrs_B	2e-16	111	168	1	58	Homeobox protein Meis1
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Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011046419.1	1e-116	PREDICTED: BEL1-like homeodomain protein 1
Refseq	XP_011046420.1	1e-116	PREDICTED: BEL1-like homeodomain protein 1
Refseq	XP_011046421.1	1e-116	PREDICTED: BEL1-like homeodomain protein 1
Refseq	XP_011046422.1	1e-116	PREDICTED: BEL1-like homeodomain protein 1
Refseq	XP_011046423.1	1e-116	PREDICTED: BEL1-like homeodomain protein 1
Swissprot	Q9SIW1	3e-95	BLH7_ARATH; BEL1-like homeodomain protein 7
TrEMBL	A0A0C9RM18	1e-178	A0A0C9RM18_9SPER; TSA: Wollemia nobilis Ref_Wollemi_Transcript_11489_4138 transcribed RNA sequence
STRING	POPTR_0006s21950.1	1e-115	(Populus trichocarpa)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G16400.1	3e-80	BEL1-like homeodomain 7

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546]