PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pta006659
Organism
Pinus taeda
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pinus; Pinus
Family C3H
Protein Properties Length: 452aa    MW: 50644.9 Da    PI: 7.3271
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PUT-157a-Pinus_taeda-30182552PU_refplantGDBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH24.64.4e-0894116427
                ---SGGGGTS--TTTTT-SS-SSS CS
    zf-CCCH   4 elCrffartGtCkyGdrCkFaHgp 27 
                ++C ff++ G+C  Gd+C+F Hgp
  Pta006659  94 VPCYFFQQ-GYCVKGDKCPFVHGP 116
                79******.*************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010311.629635IPR000571Zinc finger, CCCH-type
SMARTSM003560.0018734IPR000571Zinc finger, CCCH-type
PfamPF156637.7E-13761No hitNo description
PROSITE profilePS501039.2823763IPR000571Zinc finger, CCCH-type
SMARTSM003560.583962IPR000571Zinc finger, CCCH-type
SuperFamilySSF902294.71E-790115IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010316.01490117IPR000571Zinc finger, CCCH-type
SMARTSM003568.1E-791116IPR000571Zinc finger, CCCH-type
PfamPF006423.6E-594116IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.105.3E-595115IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 452 aa     Download sequence    Send to blast
MDEETQKRNT DCVYFLASPL TCKKGNDCEY RHSESARINP RDCWYWLGGN CLNPTCAFRH  60
PPLDGLSGAP TPATVPPSSS ASLPASGTAN KPKVPCYFFQ QGYCVKGDKC PFVHGPFSGA  120
NLTSQKTSKP SPAVTEPQAS GKQAVNETES NKDGKHPSDL SFPKAVQSID PNAVQSSNPM  180
TLKSNNFQAV QSRNPVVAKA NNFKASQSSN PVALQSNNFQ VGPLGNPLTL QSNNVKEAQL  240
QPEARHVSQS RSQPTYIKGS PHEVEHFLPE IEPTRQRIHD ASRNRSRIRP SHPPEERLQN  300
GLESEDLLGG SSPGFDVLVD DGPDQLSHRE DADYYKHDME SGRDAINGRE RSMHNKRELV  360
RTGYYDAEFQ YDHGAYEPYK NRGYERGGRK QSNAFDDRVL ERPIVRERRS LSSEDDPERN  420
NMEELTLKPT ATDCKRQEEL TFKLFYRDQF RA
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pta.204030.0root