PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

Gene Ontology |

Expression |

Basic Information? help Back to Top

TF ID

Pta006372

Organism

Pinus taeda

Taxonomic ID

3352

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pinus; Pinus

Family

bHLH

Protein Properties

Length: 548aa MW: 58439.2 Da PI: 9.4729

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PUT-157a-Pinus_taeda-69504	PU_ref	plantGDB	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	35.9	1.4e-11	306	351	5	55
HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 h+++Er RR+ri +++ L+el+P++ K +Ka++L + ++Y+k Lq Pta006372 306 HSIAERLRRERIAERMKALQELVPNS-----NKTDKASMLDEIIDYVKFLQ 351 99*********************7.....5****************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF47459	6.02E-17	299	360	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profile	PS50888	17.453	301	350	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	2.7E-16	303	360	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	5.68E-13	305	355	No hit	No description
Pfam	PF00010	6.2E-9	306	351	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	6.1E-14	307	356	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 548 aa Download sequence Send to blast
MEEFLEQMLF MPPWSDVAAV KSGPWDYNAT NAPQGNNPSN SNNGPQNLQS NTQKLFTMSL 60 LPPGIGGQGL NSQENDPYPY DDSQFLANRL RQHQLSGNSS MNQTPNQASQ GINETNTSPG 120 RSMVLQLSTG SASASQLLAS MGNSPRGTAV MTQSPSTGGS CNGSDGGMLP LPLSLGQAGK 180 SGDINESRSR DEIEASFKSA NHVRSYVLSL KIHVWFSMEV ELNVFCNDKL GPRFEPRRAI 240 SAFRRITTGR STDRPKLPYQ SGQVPMQVYG GMPQPQHQNP SPTGVGAAPP VRPRVRARRG 300 QATDPHSIAE RLRRERIAER MKALQELVPN SNKTDKASML DEIIDYVKFL QLQVKVLSMS 360 RLGGAGAVAP LVADIPAEGA NAPQGTRTNS SQNSSPDGLA LTERQVAKLM EEDMGSAMQY 420 LQGKGLCLMP ISLASAINNS GARPQAPSTP SLQGLLPPNA NDRQILEPSN SALSALTSTS 480 MTIQSSISSP GSGITEQGDN AHKAGNGTRN PKDSREANSV TKSNGIGGPA LSKNAVKGED 540 EPQRRTGQ

Sequence ? help Back to Top

Protein Sequence Length: 548 aa Download sequence Send to blast

MEEFLEQMLF MPPWSDVAAV KSGPWDYNAT NAPQGNNPSN SNNGPQNLQS NTQKLFTMSL  60
LPPGIGGQGL NSQENDPYPY DDSQFLANRL RQHQLSGNSS MNQTPNQASQ GINETNTSPG  120
RSMVLQLSTG SASASQLLAS MGNSPRGTAV MTQSPSTGGS CNGSDGGMLP LPLSLGQAGK  180
SGDINESRSR DEIEASFKSA NHVRSYVLSL KIHVWFSMEV ELNVFCNDKL GPRFEPRRAI  240
SAFRRITTGR STDRPKLPYQ SGQVPMQVYG GMPQPQHQNP SPTGVGAAPP VRPRVRARRG  300
QATDPHSIAE RLRRERIAER MKALQELVPN SNKTDKASML DEIIDYVKFL QLQVKVLSMS  360
RLGGAGAVAP LVADIPAEGA NAPQGTRTNS SQNSSPDGLA LTERQVAKLM EEDMGSAMQY  420
LQGKGLCLMP ISLASAINNS GARPQAPSTP SLQGLLPPNA NDRQILEPSN SALSALTSTS  480
MTIQSSISSP GSGITEQGDN AHKAGNGTRN PKDSREANSV TKSNGIGGPA LSKNAVKGED  540
EPQRRTGQ

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	310	315	RLRRER

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Pta.34707	0.0	root\| shoot

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G24260.1	2e-46	LJRHL1-like 1