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Plant Transcription
Factor Database
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Transcription Factor Information
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Basic
Information? help
Back to Top |
| TF ID |
Pta005013 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pinus; Pinus
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| Family |
MIKC_MADS |
| Protein Properties |
Length: 208aa MW: 23794.6 Da PI: 9.7631 |
| Description |
MIKC_MADS family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| PUT-157a-Pinus_taeda-25753 | PU_unref | plantGDB | View CDS |
| PUT-157a-Pinus_taeda-25754 | PU_ref | plantGDB | View CDS |
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| Signature Domain? help Back to Top |
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| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | SRF-TF | 90.8 | 6.9e-29 | 4 | 54 | 1 | 51 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
kri+n s+rqvtfskR+ng+lKKA+ELSvLCdaeva+iifs+tgk+ e++s
Pta005013 4 KRIQNPSRRQVTFSKRKNGLLKKAFELSVLCDAEVALIIFSETGKICEFAS 54
79***********************************************86 PP
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| 2 | K-box | 59.1 | 1.8e-20 | 84 | 167 | 15 | 98 |
K-box 15 eslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkkl 98
+ + +l+ L++++++L+++ R+++GedL+sL++keLq+Le+qL+ ++k+i +kK+++l+++ + l +k ++l+ee+ +L++kl
Pta005013 84 KIRESQLKALREKMNKLKKKERNMVGEDLDSLTMKELQRLENQLQIGIKRISDKKMKILVQSSKLLLQKVRALEEEKIELETKL 167
445678899***********************************************************************9997 PP
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| Gene Ontology ? help Back to Top |
| GO Term |
GO Category |
GO Description |
| GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
| GO:0005634 | Cellular Component | nucleus |
| GO:0003677 | Molecular Function | DNA binding |
| GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
| GO:0046983 | Molecular Function | protein dimerization activity |
| Sequence ? help Back to Top |
| Protein Sequence Length: 208 aa
Download sequence Send
to blast |
MEMKRIQNPS RRQVTFSKRK NGLLKKAFEL SVLCDAEVAL IIFSETGKIC EFASHDDMAT 60
ILEKYRIYTE TDGNMESSSV QSVKIRESQL KALREKMNKL KKKERNMVGE DLDSLTMKEL 120
QRLENQLQIG IKRISDKKMK ILVQSSKLLL QKVRALEEEK IELETKLRIR GYSFSSATNL 180
NLGLSYSTMP SGLCDMNSNG DSFSVEIP
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