 |
Plant Transcription
Factor Database
|
Transcription Factor Information
|
Basic
Information? help
Back to Top |
| TF ID |
Pta004786 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pinus; Pinus
|
| Family |
MIKC_MADS |
| Protein Properties |
Length: 220aa MW: 25266 Da PI: 9.9446 |
| Description |
MIKC_MADS family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| PUT-157a-Pinus_taeda-9494 | PU_ref | plantGDB | View CDS |
| PUT-157a-Pinus_taeda-9496 | PU_unref | plantGDB | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | SRF-TF | 87.4 | 7.9e-28 | 9 | 56 | 1 | 48 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEE CS
SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklye 48
k+ien+ rqvtf+kRr g++KKA+ELSvLCda+va+i+fss+gklye
Pta004786 9 KKIENSVHRQVTFCKRRGGLMKKAYELSVLCDADVALIVFSSRGKLYE 56
68*********************************************9 PP
|
| 2 | K-box | 80 | 5.6e-27 | 88 | 179 | 9 | 100 |
K-box 9 leeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkklee 100
+++ e+++qe++ Lk++i++L+ ++R l+Ge+L+s s++eL qLe++L+++++++R+kK+el+l++i+ lq ke+ l+ +n++L+++lee
Pta004786 88 SNNTSDEKMKQEINLLKQQIDQLKLTNRYLMGEGLGSVSFEELTQLESRLQRGINQVRAKKHELMLDEIRALQSKEHTLRINNMMLQERLEE 179
56677899*******************************************************************************99986 PP
|
| Protein Features
? help Back to Top |
 |
| Database |
Entry ID |
E-value |
Start |
End |
InterPro ID |
Description |
| SuperFamily | SSF55455 | 2.09E-31 | 1 | 86 | IPR002100 | Transcription factor, MADS-box |
| PROSITE profile | PS50066 | 31.791 | 1 | 61 | IPR002100 | Transcription factor, MADS-box |
| SMART | SM00432 | 2.5E-39 | 1 | 60 | IPR002100 | Transcription factor, MADS-box |
| CDD | cd00265 | 2.11E-41 | 2 | 79 | No hit | No description |
| PRINTS | PR00404 | 2.3E-29 | 3 | 23 | IPR002100 | Transcription factor, MADS-box |
| PROSITE pattern | PS00350 | 0 | 3 | 57 | IPR002100 | Transcription factor, MADS-box |
| Pfam | PF00319 | 3.1E-25 | 10 | 56 | IPR002100 | Transcription factor, MADS-box |
| PRINTS | PR00404 | 2.3E-29 | 23 | 38 | IPR002100 | Transcription factor, MADS-box |
| PRINTS | PR00404 | 2.3E-29 | 38 | 59 | IPR002100 | Transcription factor, MADS-box |
| Pfam | PF01486 | 1.7E-23 | 89 | 177 | IPR002487 | Transcription factor, K-box |
| PROSITE profile | PS51297 | 14.431 | 93 | 183 | IPR002487 | Transcription factor, K-box |
| Gene Ontology ? help Back to Top |
| GO Term |
GO Category |
GO Description |
| GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
| GO:0005634 | Cellular Component | nucleus |
| GO:0003677 | Molecular Function | DNA binding |
| GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
| GO:0046983 | Molecular Function | protein dimerization activity |
| Sequence ? help Back to Top |
| Protein Sequence Length: 220 aa
Download sequence Send
to blast |
MGRGKIEIKK IENSVHRQVT FCKRRGGLMK KAYELSVLCD ADVALIVFSS RGKLYELGTS 60
NNNNNRSMRS ILERYQKCSQ TAKHMNFSNN TSDEKMKQEI NLLKQQIDQL KLTNRYLMGE 120
GLGSVSFEEL TQLESRLQRG INQVRAKKHE LMLDEIRALQ SKEHTLRINN MMLQERLEEC 180
TNGKRLSSLL THGFTTLLPN QHVPSGYDLS NQSLSSNVEM
|
| Expression --
Description ? help
Back to Top |
| Source |
Description |
| Uniprot | TISSUE SPECIFICITY: Expressed in flowers and seeds (Ref.1). Expressed in endotesta cell layer of developing seeds (PubMed:28369525). {ECO:0000269|PubMed:28369525, ECO:0000269|Ref.1}. |
| Functional Description ? help
Back to Top |
| Source |
Description |
| UniProt | Probable transcription factor involved in seed development. {ECO:0000269|PubMed:29853599}. |
| UniProt | Probable transcription factor involved in seed development (PubMed:21447172, Ref.1, PubMed:29853599). Plays a role in seed morphogenesis by promoting the correct development of endotesta cell layer, which directs the further development of the seed coat, the endosperm, and consequently the embryo (Ref.1, PubMed:29853599). {ECO:0000269|PubMed:21447172, ECO:0000269|PubMed:29853599, ECO:0000269|Ref.1}. |
| Publications
? help Back to Top |
- Jaillon O, et al.
The grapevine genome sequence suggests ancestral hexaploidization in major angiosperm phyla.
Nature, 2007. 449(7161): p. 463-7
[PMID:17721507] - Díaz-Riquelme J,Lijavetzky D,Martínez-Zapater JM,Carmona MJ
Genome-wide analysis of MIKCC-type MADS box genes in grapevine.
Plant Physiol., 2009. 149(1): p. 354-69
[PMID:18997115] - Mejía N, et al.
Molecular, genetic and transcriptional evidence for a role of VvAGL11 in stenospermocarpic seedlessness in grapevine.
BMC Plant Biol., 2011. 11: p. 57
[PMID:21447172] - Grimplet J,Martínez-Zapater JM,Carmona MJ
Structural and functional annotation of the MADS-box transcription factor family in grapevine.
BMC Genomics, 2016. 17: p. 80
[PMID:26818751] - Malabarba J, et al.
The MADS-box gene Agamous-like 11 is essential for seed morphogenesis in grapevine.
J. Exp. Bot., 2017. 68(7): p. 1493-1506
[PMID:28369525] - Royo C, et al.
The Major Origin of Seedless Grapes Is Associated with a Missense Mutation in the MADS-Box Gene VviAGL11.
Plant Physiol., 2018. 177(3): p. 1234-1253
[PMID:29853599]
|
