PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pta003838
Organism
Pinus taeda
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pinus; Pinus
Family C3H
Protein Properties Length: 264aa    MW: 28725.2 Da    PI: 9.839
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
gnl|UG|Pta#S16890882PU_unrefUnigeneView CDS
PUT-157a-Pinus_taeda-68094PU_refplantGDBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH185.2e-06212235225
                -S---SGGGGTS--TTTTT-SS-S CS
    zf-CCCH   2 ktelCrffartGtCkyGdrCkFaH 25 
                ++++C +f     C++G++C F H
  Pta003838 212 FRKNCLYFNTPKGCRRGSSCLFLH 235
                6889******************** PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010311.15210238IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.107.5E-4216236IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 264 aa     Download sequence    Send to blast
KPNGNESTHK FENVASSPSN CKPQVAPSVN VGTNKNRVSN GEIPSSQAQP SASLPISDAR  60
VFITSELVPR PSEGLEITNG RNNSMPMASS APLPSTSGHA SSQMVSRPGM LPVTSTPHAV  120
CHIPNVLPTT TQTITSGPKW AGPQNEQYYK NLIQQHGGPN KNDYIHQNGL HYRKELIQQH  180
GGGQQGFERS TQLQPGNMGG HSSLLDANKA KFRKNCLYFN TPKGCRRGSS CLFLHELVDR  240
PRMDESDMPQ TKRAKVEIEI SGKH
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pta.166960.0root