PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

Expression |

Basic Information? help Back to Top

TF ID

Pta002805

Organism

Pinus taeda

Taxonomic ID

3352

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pinus; Pinus

Family

Trihelix

Protein Properties

Length: 313aa MW: 34291.9 Da PI: 9.0553

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
gnl\|UG\|Pta#S24128651	PU_unref	Unigene	View CDS
PUT-157a-Pinus_taeda-14527	PU_ref	plantGDB	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	35	3.8e-11	30	117	2	86
trihelix 2 WtkqevlaLiearremeerlrrgklkkplWeevskkm.....rergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 W + v L++ + e+ +++ g lk ++W+++ + + ++ ++ kqC++k enl++ryk +k+++ +r ss ++++f++l+ Pta002805 30 WHPSTVSRLLDSYGEKCASIK-GYLKIKDWDDIVRTVnahcdASNIAPKTMKQCRDKVENLKRRYKLEKRRAANR-GLSSVHWSFFHKLD 117 888999999999999888776.559999***9999998877788899********************98.788889****98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF13837	2.1E-14	28	119	No hit	No description

Sequence ? help Back to Top
Protein Sequence Length: 313 aa Download sequence Send to blast
MGSVSDDEDE YGNAGAVVGG STSSVSRCEW HPSTVSRLLD SYGEKCASIK GYLKIKDWDD 60 IVRTVNAHCD ASNIAPKTMK QCRDKVENLK RRYKLEKRRA ANRGLSSVHW SFFHKLDEIM 120 AMATATATGS DKGTSLLEAC QSSFELNQGV DCELPEGFAG ESMPPPPPMS MSMSMSDMVL 180 SVFAGADRGK GLVDNTGGTD CSLDDILNNV CSYNSKNNRR LDFQDSSSPE KQPPPKRKKS 240 SASNSPSVSK KRKGKSTNPI QSLADALVGF SEMYARIEIA KMEMFTKLVL ELAKLRTKRK 300 KRSHSPSIPS DPK

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	236	252	RKKSSASNSPSVSKKRK
2	299	303	KKRSH

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Pta.13280	0.0	embryo\| root\| shoot\| xylem

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G10030.1	3e-18	Trihelix family protein