 |
Plant Transcription
Factor Database
|
Transcription Factor Information
|
Basic
Information? help
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| TF ID |
Pta002544 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pinus; Pinus
|
| Family |
HD-ZIP |
| Protein Properties |
Length: 330aa MW: 36814.2 Da PI: 6.7096 |
| Description |
HD-ZIP family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| gnl|UG|Pta#S26636103 | PU_unref | Unigene | View CDS |
| PUT-157a-Pinus_taeda-73277 | PU_ref | plantGDB | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | Homeobox | 56.6 | 4.3e-18 | 181 | 235 | 2 | 56 |
T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
Homeobox 2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56
rk+ ++keq Lee F+++++++ +++ LAk+l+L+ rqV vWFqNrRa+ k
Pta002544 181 RKKLHLSKEQSALLEESFREHHTLNPKQKNALAKRLSLKSRQVEVWFQNRRARTK 235
678889***********************************************98 PP
|
| 2 | HD-ZIP_I/II | 120.3 | 1e-38 | 181 | 270 | 1 | 91 |
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreel 91
+kk++lskeq++lLEesF+e+++L+p++K++la++L l+ rqv+vWFqnrRARtk+kq+E+d+e+Lkr++++l+een+rL++eveeLr ++
Pta002544 181 RKKLHLSKEQSALLEESFREHHTLNPKQKNALAKRLSLKSRQVEVWFQNRRARTKLKQTEVDCEVLKRCCETLTEENRRLQREVEELR-AI 270
69*************************************************************************************9.44 PP
|
| Gene Ontology ? help Back to Top |
| GO Term |
GO Category |
GO Description |
| GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
| GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
| GO:0043565 | Molecular Function | sequence-specific DNA binding |
| Sequence ? help Back to Top |
| Protein Sequence Length: 330 aa
Download sequence Send
to blast |
RPGNFVSLYI FTLNIFQSRI YTHNMFLSRP RDINLVSEKQ EGHEEYLSVD LTMAVSAGLG 60
ITRSHGSEVG AAQLADTSSS QTAGSLRNFD MNRLPSGTDE EGGGGSSSAV STVSPFLSDI 120
MVRYGEKDNG TWDGEVNERT HYQDQGLYNQ NTESLRNIAG NCEEDEGDHV SAGGDGSPPP 180
RKKLHLSKEQ SALLEESFRE HHTLNPKQKN ALAKRLSLKS RQVEVWFQNR RARTKLKQTE 240
VDCEVLKRCC ETLTEENRRL QREVEELRAI KVAPPCVIAQ DFYMPLPAAT LTMCPSCERV 300
GSNIDMKRGT LTFAKPSYYL TNLRQSSAAC
|
| Nucleic Localization
Signal ? help
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 |
| No. |
Start |
End |
Sequence |
| 1 | 229 | 237 | RRARTKLKQ |
| Expression --
Description ? help
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| Source |
Description |
| Uniprot | TISSUE SPECIFICITY: Expressed in seedlings, roots, stems, leaf sheaths and blades and panicles. {ECO:0000269|PubMed:17999151}. |
| Functional Description ? help
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| Source |
Description |
| UniProt | Probable transcription factor. {ECO:0000250}. |
