PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pta002436
Organism
Pinus taeda
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pinus; Pinus
Family LBD
Protein Properties Length: 336aa    MW: 37246.2 Da    PI: 6.499
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
gnl|UG|Pta#S20496618PU_unrefUnigeneView CDS
PUT-157a-Pinus_taeda-31450PU_refplantGDBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF26090.32.4e-284102194
     DUF260   1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkael 94 
                +C++C+vlr++C++ C+++p++      ++q++++ +++k++G++ +++l++a pe+ r+++++sl+yeA+ r+ +P+ G+vg++ ++++ql+q+++e 
  Pta002436   4 SCNGCRVLRKGCSETCIIRPCLqwiknEESQANATVFLAKFYGRAGLMNLISAGPEHLRPAIFKSLLYEACGRMVNPIFGSVGLLCSGNWQLCQAAVES 102
                6*********************9998767889***************************************************************9886 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089116.4833109IPR004883Lateral organ boundaries, LOB
PfamPF031952.9E-234101IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 336 aa     Download sequence    Send to blast
MRMSCNGCRV LRKGCSETCI IRPCLQWIKN EESQANATVF LAKFYGRAGL MNLISAGPEH  60
LRPAIFKSLL YEACGRMVNP IFGSVGLLCS GNWQLCQAAV ESILKGCPIH PILVDSSGTQ  120
MPTERSNTNP SVRSTLMETI TNELHKVKTK GRFKRRKSTV KDVSLNNSDA EDLGASQVFN  180
LRWRRCYPGE SQTPALEGIP NHLVSSDSSC ESLEHFDDLR NHKEADMEGH MSKAMDMGPV  240
NIKCCSDQND HKATMESVPE VSYTQAPDLE DMQAIKHEYE SISSDVTDVK LELTLSSQGS  300
ATHAAEKHHT NLHWNSCMEH SDEPTITYLG LGLTQA
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pta.126870.0root| shoot| xylem
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006842288.12e-81LOB domain-containing protein 40
TrEMBLA0A3G6J9E00.0A0A3G6J9E0_PINTA; ASYMMETRIC LEAVES 2-like protein 37
STRINGERN039637e-81(Amborella trichopoda)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G67100.16e-68LOB domain-containing protein 40