PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

Gene Ontology |

Expression |

Basic Information? help Back to Top

TF ID

Pta002271

Organism

Pinus taeda

Taxonomic ID

3352

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pinus; Pinus

Family

Dof

Protein Properties

Length: 347aa MW: 36490.2 Da PI: 7.6279

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
gnl\|UG\|Pta#S21717547	PU_unref	Unigene	View CDS
PUT-157a-Pinus_taeda-112982549	PU_ref	plantGDB	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	124.4	3.5e-39	30	90	2	62
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62 +++ +kcprCds ntkfCyynny+lsqPryfCk+CrryWtkGGalrnvPvGgg+rknk+s+ Pta002271 30 PTQVQKCPRCDSLNTKFCYYNNYNLSQPRYFCKNCRRYWTKGGALRNVPVGGGCRKNKRSN 90 57889*****************************************************975 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF02701	4.2E-33	32	88	IPR003851	Zinc finger, Dof-type
ProDom	PD007478	2.0E-25	32	83	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	29.516	34	88	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	36	72	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 347 aa Download sequence Send to blast
MQVSSSSFEG IPDMAVAVQN LGGRRSKPHP TQVQKCPRCD SLNTKFCYYN NYNLSQPRYF 60 CKNCRRYWTK GGALRNVPVG GGCRKNKRSN KRNSDKRPAA SSAPPASAAD NQAAGGASAA 120 SSSSSLVNGS DRSSIGFESD CNNTTTSTTT TNTGGATGTP AGVSSGQLFD GMNPINPPPP 180 SLDPQARGAL LNSGNNLSSI LDPSAYENAQ FSCMDPVISS TPDWSRGLSM PWKQQQTLTS 240 LLTDGIRTSL DGFLSQPPPL LEDINSLAEA ATRSVFGVKT SAATVPWPSL QDDDNIKAQS 300 LQGLEWQTAN GNSSSDAGLL EIQSDLGPWG AGSWPDLGNY GPGSSLP

Sequence ? help Back to Top

Protein Sequence Length: 347 aa Download sequence Send to blast

MQVSSSSFEG IPDMAVAVQN LGGRRSKPHP TQVQKCPRCD SLNTKFCYYN NYNLSQPRYF  60
CKNCRRYWTK GGALRNVPVG GGCRKNKRSN KRNSDKRPAA SSAPPASAAD NQAAGGASAA  120
SSSSSLVNGS DRSSIGFESD CNNTTTSTTT TNTGGATGTP AGVSSGQLFD GMNPINPPPP  180
SLDPQARGAL LNSGNNLSSI LDPSAYENAQ FSCMDPVISS TPDWSRGLSM PWKQQQTLTS  240
LLTDGIRTSL DGFLSQPPPL LEDINSLAEA ATRSVFGVKT SAATVPWPSL QDDDNIKAQS  300
LQGLEWQTAN GNSSSDAGLL EIQSDLGPWG AGSWPDLGNY GPGSSLP

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Pta.7037	0.0	embryo\| root\| shoot\| xylem

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
TrEMBL	B0BCH1	0.0	B0BCH1_PINPS; Dof transcription factor