PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

Gene Ontology |

Expression |

Basic Information? help Back to Top

TF ID

Pta002132

Organism

Pinus taeda

Taxonomic ID

3352

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pinus; Pinus

Family

Dof

Protein Properties

Length: 357aa MW: 39244.8 Da PI: 5.674

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
gnl\|UG\|Pta#S25131051	PU_unref	Unigene	View CDS
PUT-157a-Pinus_taeda-49007	PU_ref	plantGDB	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	127.2	5.1e-40	49	109	2	62
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62 +e+alkcprCdstntkfCyynny+lsqPr+fCk+CrryWtkGGalrnvPvGgg+rknk+++ Pta002132 49 TEQALKCPRCDSTNTKFCYYNNYNLSQPRHFCKTCRRYWTKGGALRNVPVGGGCRKNKRAK 109 6899******************************************************976 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD007478	5.0E-28	47	107	IPR003851	Zinc finger, Dof-type
Pfam	PF02701	8.8E-34	51	107	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	29.991	53	107	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	55	91	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 357 aa Download sequence Send to blast
MVLSSVEVCM DSADWTQSFL QNSALKLPED LMPCPRAPPM MERRIKPQTE QALKCPRCDS 60 TNTKFCYYNN YNLSQPRHFC KTCRRYWTKG GALRNVPVGG GCRKNKRAKR AVDHPVSAQN 120 EASTSAAPGN EVPDRSPFEP PSSKSIYYGG ENMNLTGLPF SRIQQDRAAL AHCNSSSFLG 180 MSCGTQSASL EPHLSALNTF NSFKSNNPGL DFPSLSTDQN SLFETSQPQL SRAMGSALFS 240 MPMAPGLDDP ADFHWKLQQQ QQKLSFPFGD GQIENGPGSE GHDFLTYEDS SKDDQKPEVV 300 TKLPSSSVKV EEDQNALATD WQVPASEPLF AGDSNSYWNG GSWPDIASYG LSVCPLI

Sequence ? help Back to Top

Protein Sequence Length: 357 aa Download sequence Send to blast

MVLSSVEVCM DSADWTQSFL QNSALKLPED LMPCPRAPPM MERRIKPQTE QALKCPRCDS  60
TNTKFCYYNN YNLSQPRHFC KTCRRYWTKG GALRNVPVGG GCRKNKRAKR AVDHPVSAQN  120
EASTSAAPGN EVPDRSPFEP PSSKSIYYGG ENMNLTGLPF SRIQQDRAAL AHCNSSSFLG  180
MSCGTQSASL EPHLSALNTF NSFKSNNPGL DFPSLSTDQN SLFETSQPQL SRAMGSALFS  240
MPMAPGLDDP ADFHWKLQQQ QQKLSFPFGD GQIENGPGSE GHDFLTYEDS SKDDQKPEVV  300
TKLPSSSVKV EEDQNALATD WQVPASEPLF AGDSNSYWNG GSWPDIASYG LSVCPLI

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Pta.12957	0.0	root\| shoot\| xylem

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
TrEMBL	T2B8A7	0.0	T2B8A7_PINPS; Dof2

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G37590.1	7e-36	DNA binding with one finger 2.4