PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

Gene Ontology |

Expression |

Basic Information? help Back to Top

TF ID

Pta002078

Organism

Pinus taeda

Taxonomic ID

3352

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pinus; Pinus

Family

Trihelix

Protein Properties

Length: 362aa MW: 39666.1 Da PI: 8.2278

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
gnl\|UG\|Pta#S21717406	PU_unref	Unigene	View CDS
PUT-157a-Pinus_taeda-30273	PU_ref	plantGDB	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	82.3	6.6e-26	80	173	1	85
trihelix 1 rWtkqevlaLiearremeerlrrgk..........lkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdql 85 rWt+qe+l+Lie++r +e+r ++++ + +W+++s++++++g++r+p+qC+++w+nl+++ykki+++e+++ + +s +++ +++ Pta002078 80 RWTRQEILVLIEGKRVVESRGKKSRvtvdgqngqvNTESKWSSISSYCKRHGVSREPVQCRKRWSNLSGDYKKIRDWENSHVELQS-FWAMRNDI 173 8*******************987777888888899*****************************************987776.77777766 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50090	6.632	80	147	IPR017877	Myb-like domain
Gene3D	G3DSA:1.10.10.60	6.0E-6	80	146	IPR009057	Homeodomain-like
Pfam	PF13837	1.5E-12	80	169	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 362 aa Download sequence Send to blast
MAVESNGFAF KSPPDLLLSS PRNPNGKASA NEAKIPAGIP KPHAIGKEEA TANGSSNPST 60 ADHAGGDGSD GQDKTPRLPR WTRQEILVLI EGKRVVESRG KKSRVTVDGQ NGQVNTESKW 120 SSISSYCKRH GVSREPVQCR KRWSNLSGDY KKIRDWENSH VELQSFWAMR NDIRRENKLP 180 GFFDREVYSI LDKFIGKQDG SKEAIRVMQE PIFDSGRPCG GGEDTLFSDF EHSAEEEVAG 240 SPEKEAAVML DSPTTTAATP PQPHRQGVRT EKVPTPVAEK GTTSCASGQK RKRTSSEGES 300 DSDLKDQLIA VLERNSRVLS AHVDAQNLNC QLDRNQRRDH ADSLVGVLGK LADALGRIAD 360 KL

Sequence ? help Back to Top

Protein Sequence Length: 362 aa Download sequence Send to blast

MAVESNGFAF KSPPDLLLSS PRNPNGKASA NEAKIPAGIP KPHAIGKEEA TANGSSNPST  60
ADHAGGDGSD GQDKTPRLPR WTRQEILVLI EGKRVVESRG KKSRVTVDGQ NGQVNTESKW  120
SSISSYCKRH GVSREPVQCR KRWSNLSGDY KKIRDWENSH VELQSFWAMR NDIRRENKLP  180
GFFDREVYSI LDKFIGKQDG SKEAIRVMQE PIFDSGRPCG GGEDTLFSDF EHSAEEEVAG  240
SPEKEAAVML DSPTTTAATP PQPHRQGVRT EKVPTPVAEK GTTSCASGQK RKRTSSEGES  300
DSDLKDQLIA VLERNSRVLS AHVDAQNLNC QLDRNQRRDH ADSLVGVLGK LADALGRIAD  360
KL

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Pta.13295	0.0	embryo\| needle\| root\| shoot\| xylem

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010249232.1	1e-103	PREDICTED: trihelix transcription factor ASR3-like
TrEMBL	A0A0D6QYM7	1e-131	A0A0D6QYM7_ARACU; Uncharacterized protein
STRING	XP_010249232.1	1e-103	(Nelumbo nucifera)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G33550.1	1e-79	Trihelix family protein