PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

Expression |

Basic Information? help Back to Top

TF ID

Pta001988

Organism

Pinus taeda

Taxonomic ID

3352

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pinus; Pinus

Family

Trihelix

Protein Properties

Length: 370aa MW: 41223.4 Da PI: 5.5695

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
gnl\|UG\|Pta#S24129258	PU_unref	Unigene	View CDS
PUT-157a-Pinus_taeda-38085	PU_ref	plantGDB	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	106.7	1.5e-33	67	151	1	86
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 rW+k ev+aLi++r+ +e r++++ k+plWee+s+ m++ g++rs+k+Ckekwen+nk+ykk+ke++kkr +e+ +tcpyf+qle Pta001988 67 RWPKPEVHALIKLRTGLEPRYQDAGPKGPLWEEISAGMARLGYSRSSKRCKEKWENINKYYKKVKESNKKR-PEDAKTCPYFHQLE 151 8*******************************************************************8.99999******8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50090	7.085	60	124	IPR017877	Myb-like domain
Pfam	PF13837	5.8E-23	66	153	No hit	No description
CDD	cd12203	3.01E-33	66	131	No hit	No description

Sequence ? help Back to Top
Protein Sequence Length: 370 aa Download sequence Send to blast
NFQAPVMAPV MAPVAQSTTT INNTVPLPTH ETHPARDVVT PHHQRDTTTQ DVNVDQTELT 60 FDPNSSRWPK PEVHALIKLR TGLEPRYQDA GPKGPLWEEI SAGMARLGYS RSSKRCKEKW 120 ENINKYYKKV KESNKKRPED AKTCPYFHQL EQLYKKKIFG NAAKQEHPNQ EDARIEQLPG 180 GNNNNSDRNE RQSTDGILVI VPPPGSSSDA KNSNANPNNN GPPIPSSSGA MQATFFTSPE 240 NGTGADQRAL KKPEGLVMDV MDMDDMRSAP QHQQQSVVDD YDDDKMDTEE EEEDSDNNSE 300 QEHHNIIPIP TIATTHDRQP TTVVDHLPFA EFVHESRTST TAAATAASSF MAMVHRFATT 360 EAPEFKTSKA

Sequence ? help Back to Top

Protein Sequence Length: 370 aa Download sequence Send to blast

NFQAPVMAPV MAPVAQSTTT INNTVPLPTH ETHPARDVVT PHHQRDTTTQ DVNVDQTELT  60
FDPNSSRWPK PEVHALIKLR TGLEPRYQDA GPKGPLWEEI SAGMARLGYS RSSKRCKEKW  120
ENINKYYKKV KESNKKRPED AKTCPYFHQL EQLYKKKIFG NAAKQEHPNQ EDARIEQLPG  180
GNNNNSDRNE RQSTDGILVI VPPPGSSSDA KNSNANPNNN GPPIPSSSGA MQATFFTSPE  240
NGTGADQRAL KKPEGLVMDV MDMDDMRSAP QHQQQSVVDD YDDDKMDTEE EEEDSDNNSE  300
QEHHNIIPIP TIATTHDRQP TTVVDHLPFA EFVHESRTST TAAATAASSF MAMVHRFATT  360
EAPEFKTSKA

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Pta.12921	0.0	embryo\| root\| xylem

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010250883.1	7e-58	PREDICTED: trihelix transcription factor GTL1 isoform X1
TrEMBL	A0A0D6QXM9	1e-128	A0A0D6QXM9_ARACU; Uncharacterized protein
STRING	Aquca_037_00343.1	2e-57	(Aquilegia coerulea)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G76880.1	3e-38	Trihelix family protein