PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

Expression |

Basic Information? help Back to Top

TF ID

Pta001813

Organism

Pinus taeda

Taxonomic ID

3352

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pinus; Pinus

Family

Trihelix

Protein Properties

Length: 389aa MW: 41823.7 Da PI: 9.8262

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
gnl\|UG\|Pta#S24123302	PU_unref	Unigene	View CDS
PUT-157a-Pinus_taeda-42175	PU_ref	plantGDB	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	41.4	3.6e-13	2	86	7	86
trihelix 7 vlaLiearremeerlrrgklkkplWeevskkm....rergferspkqCkekwenlnkrykkikegekkr.tsessstcpyfdqle 86 + L+++++ ++++ +rg+lk+++We+v+ ++ ++ +sp qCk+k +++++y+ ++ ++ + + ss++p+f +++ Pta001813 2 INSLLDVYEAKWNHRNRGNLKGGDWEDVAMRVsargGGGKSAKSPFQCKNKVASMKQKYRSETLLQGLNgGGGGSSRWPFFARMD 86 678***************************65444445689**************998777764588999******8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF13837	4.7E-13	3	88	No hit	No description

Sequence ? help Back to Top
Protein Sequence Length: 389 aa Download sequence Send to blast
XINSLLDVYE AKWNHRNRGN LKGGDWEDVA MRVSARGGGG KSAKSPFQCK NKVASMKQKY 60 RSETLLQGLN GGGGGSSRWP FFARMDTMLR VPRAENTNGN AAPPGSGGAI GFRPLQAADL 120 GGDSEQEVLR INGGPLLSNG GEQHNKPPTE SHSNDNDNAI LMIRNGDEEC EADDASNTLP 180 PPPPPPQRKP SGGGGAADSD DTSKYATAAG KPNARHRKYL SREVATSIRS FADSILKLER 240 AKMEMFKDSE RLRAEMEARR VDMELKRTEI IMNTQLEIAK LFSGKTKKKK LKRKPNTSES 300 LEIASPSNNG GHGNGAPPPT PLNCGSCQLF GDYVSNGGTS NAQQQQQCSS SVMVHPPHFV 360 PTAISVPVVQ SIPHALQFMP SPVSQPKLG

Sequence ? help Back to Top

Protein Sequence Length: 389 aa Download sequence Send to blast

XINSLLDVYE AKWNHRNRGN LKGGDWEDVA MRVSARGGGG KSAKSPFQCK NKVASMKQKY  60
RSETLLQGLN GGGGGSSRWP FFARMDTMLR VPRAENTNGN AAPPGSGGAI GFRPLQAADL  120
GGDSEQEVLR INGGPLLSNG GEQHNKPPTE SHSNDNDNAI LMIRNGDEEC EADDASNTLP  180
PPPPPPQRKP SGGGGAADSD DTSKYATAAG KPNARHRKYL SREVATSIRS FADSILKLER  240
AKMEMFKDSE RLRAEMEARR VDMELKRTEI IMNTQLEIAK LFSGKTKKKK LKRKPNTSES  300
LEIASPSNNG GHGNGAPPPT PLNCGSCQLF GDYVSNGGTS NAQQQQQCSS SVMVHPPHFV  360
PTAISVPVVQ SIPHALQFMP SPVSQPKLG

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Pta.5178	0.0	embryo\| root\| xylem

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G54390.1	4e-22	sequence-specific DNA binding transcription factors