PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

Gene Ontology |

Expression |

Function |

Publication

Basic Information? help Back to Top

TF ID

Pta001695

Organism

Pinus taeda

Taxonomic ID

3352

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pinus; Pinus

Family

MYB_related

Protein Properties

Length: 404aa MW: 43918.9 Da PI: 6.3237

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
gnl\|UG\|Pta#S24124072	PU_unref	Unigene	View CDS
PUT-157a-Pinus_taeda-19073	PU_ref	plantGDB	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	40.6	5.9e-13	62	106	1	47
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 r +W+++E++++++a +++ + Wk+I + +g +t q++s+ qky Pta001695 62 RESWSEQEHDKFLEALQLFDRD-WKKIEAFVG-SKTVIQIRSHAQKY 106 789***************77.*****.***********9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF46689	4.93E-16	56	112	IPR009057	Homeodomain-like
PROSITE profile	PS51294	14.966	57	111	IPR017930	Myb domain
TIGRFAMs	TIGR01557	6.9E-18	60	109	IPR006447	Myb domain, plants
Gene3D	G3DSA:1.10.10.60	5.5E-6	61	102	IPR009057	Homeodomain-like
SMART	SM00717	1.1E-10	61	109	IPR001005	SANT/Myb domain
Pfam	PF00249	8.0E-11	62	106	IPR001005	SANT/Myb domain
CDD	cd00167	6.41E-8	64	107	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 404 aa Download sequence Send to blast
MPMLAETYRD SFETTSGGSS VDLVGMALPG LAPNLSSASV SASASEDSAK KIRKPYTITK 60 SRESWSEQEH DKFLEALQLF DRDWKKIEAF VGSKTVIQIR SHAQKYFLKV QKNGTREHVP 120 PPRPKRKASH PYPQKASKNV PVSQQVSTAF PTATTQLDSG YYPRAESSSI LTKSGSSCPT 180 VSSWVHHTIP PIDASFVEKD DGGLPGIATG NNCSSGSTES SPPTWPPCSE IPEKVKPDFS 240 QVYKFIGSVF DPSTTDHLKK LKEMDPIDLE TVLLLMRNLS INLSSPDFEE HKLFLSVYDM 300 NTEDAEPALE NQTDECVAVP GTAAKQPSDL WNGPLGSVHL GSVKGHEKEE QNSQQKSHDL 360 KGSSDSKHSD LDGSSVNGTA ASFHGNLAKT CGMTRSCFSN EAPT

Sequence ? help Back to Top

Protein Sequence Length: 404 aa Download sequence Send to blast

MPMLAETYRD SFETTSGGSS VDLVGMALPG LAPNLSSASV SASASEDSAK KIRKPYTITK  60
SRESWSEQEH DKFLEALQLF DRDWKKIEAF VGSKTVIQIR SHAQKYFLKV QKNGTREHVP  120
PPRPKRKASH PYPQKASKNV PVSQQVSTAF PTATTQLDSG YYPRAESSSI LTKSGSSCPT  180
VSSWVHHTIP PIDASFVEKD DGGLPGIATG NNCSSGSTES SPPTWPPCSE IPEKVKPDFS  240
QVYKFIGSVF DPSTTDHLKK LKEMDPIDLE TVLLLMRNLS INLSSPDFEE HKLFLSVYDM  300
NTEDAEPALE NQTDECVAVP GTAAKQPSDL WNGPLGSVHL GSVKGHEKEE QNSQQKSHDL  360
KGSSDSKHSD LDGSSVNGTA ASFHGNLAKT CGMTRSCFSN EAPT

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Pta.8756	0.0	embryo\| root\| xylem

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor. {ECO:0000250}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010276889.1	1e-127	PREDICTED: protein REVEILLE 6-like
Swissprot	Q8H0W3	8e-97	RVE6_ARATH; Protein REVEILLE 6
TrEMBL	B8LMI5	0.0	B8LMI5_PICSI; Uncharacterized protein
STRING	XP_010276889.1	1e-126	(Nelumbo nucifera)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G52660.2	2e-94	MYB_related family protein

Publications ? help Back to Top
Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Gray JA,Shalit-Kaneh A,Chu DN,Hsu PY,Harmer SL The REVEILLE Clock Genes Inhibit Growth of Juvenile and Adult Plants by Control of Cell Size. Plant Physiol., 2017. 173(4): p. 2308-2322 [PMID:28254761]