PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

Gene Ontology |

Expression |

Basic Information? help Back to Top

TF ID

Pta001601

Organism

Pinus taeda

Taxonomic ID

3352

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pinus; Pinus

Family

C3H

Protein Properties

Length: 418aa MW: 44872.4 Da PI: 8.6019

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
gnl\|UG\|Pta#S25800139	PU_unref	Unigene	View CDS
PUT-157a-Pinus_taeda-17954	PU_ref	plantGDB	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	32.1	1.9e-10	14	40	1	27
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 ++++ C +++rtG C +G +C+F+H+p Pta001601 14 PGEPDCTYYMRTGLCGFGMSCRFNHPP 40 5789*********************97 PP
2	zf-CCCH	40.3	5.4e-13	60	85	2	27
-S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHgp 27 ++++C+++++tGtCk+G++CkF+H++ Pta001601 60 GQPECQYYLKTGTCKFGATCKFHHPR 85 5799********************96 PP
3	zf-CCCH	38.2	2.4e-12	107	131	3	27
S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHgp 27 +++C +++rtG+CkyG++CkF+H+p Pta001601 107 EKECAYYLRTGQCKYGATCKFHHPP 131 679********************97 PP
4	zf-CCCH	31.2	3.7e-10	277	302	2	27
-S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHgp 27 ++ +C+f+++tG Ck+G +C+++H++ Pta001601 277 GQQECQFYMKTGDCKFGMTCRYHHPK 302 6789********************96 PP
5	zf-CCCH	35	2.5e-11	325	348	4	27
---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 4 elCrffartGtCkyGdrCkFaHgp 27 + C ff+r+G+Ck+G++CkF H++ Pta001601 325 PACTFFSRYGICKFGPTCKFDHPM 348 78********************95 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50103	13.619	13	41	IPR000571	Zinc finger, CCCH-type
SMART	SM00356	3.6E-5	13	40	IPR000571	Zinc finger, CCCH-type
Pfam	PF00642	6.2E-8	15	40	IPR000571	Zinc finger, CCCH-type
SuperFamily	SSF90229	2.35E-5	18	41	IPR000571	Zinc finger, CCCH-type
Gene3D	G3DSA:4.10.1000.10	7.6E-4	19	39	IPR000571	Zinc finger, CCCH-type
PROSITE profile	PS50103	15.413	58	86	IPR000571	Zinc finger, CCCH-type
SMART	SM00356	3.9E-6	58	85	IPR000571	Zinc finger, CCCH-type
Pfam	PF00642	2.2E-10	61	85	IPR000571	Zinc finger, CCCH-type
SuperFamily	SSF90229	1.83E-6	62	87	IPR000571	Zinc finger, CCCH-type
Gene3D	G3DSA:4.10.1000.10	6.3E-5	64	85	IPR000571	Zinc finger, CCCH-type
PROSITE profile	PS50103	15.638	104	132	IPR000571	Zinc finger, CCCH-type
SuperFamily	SSF90229	2.75E-6	104	131	IPR000571	Zinc finger, CCCH-type
SMART	SM00356	6.6E-6	104	131	IPR000571	Zinc finger, CCCH-type
Pfam	PF00642	5.6E-10	107	131	IPR000571	Zinc finger, CCCH-type
Gene3D	G3DSA:4.10.1000.10	7.3E-5	110	129	IPR000571	Zinc finger, CCCH-type
SMART	SM00356	1.8E-4	275	302	IPR000571	Zinc finger, CCCH-type
PROSITE profile	PS50103	14.68	275	303	IPR000571	Zinc finger, CCCH-type
Pfam	PF00642	1.5E-7	277	302	IPR000571	Zinc finger, CCCH-type
SuperFamily	SSF90229	1.27E-5	278	304	IPR000571	Zinc finger, CCCH-type
Gene3D	G3DSA:4.10.1000.10	7.4E-4	281	302	IPR000571	Zinc finger, CCCH-type
SuperFamily	SSF90229	1.96E-5	319	347	IPR000571	Zinc finger, CCCH-type
PROSITE profile	PS50103	14.371	321	349	IPR000571	Zinc finger, CCCH-type
SMART	SM00356	7.2E-7	321	348	IPR000571	Zinc finger, CCCH-type
Pfam	PF00642	8.0E-9	324	348	IPR000571	Zinc finger, CCCH-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 418 aa Download sequence Send to blast
XAGEPEIGSY PERPGEPDCT YYMRTGLCGF GMSCRFNHPP NRKQAAAAAR NKGEYPERLG 60 QPECQYYLKT GTCKFGATCK FHHPRDKAGS TGRAAINVLG YPLRPNEKEC AYYLRTGQCK 120 YGATCKFHHP PPVGPLVPVR GSSLFTPVQS PTTPGPQAYP GSLQTWPMQR ASFIQSPRWQ 180 GPSSYAPLIL PQGIVPVPSW STYPQGQVGS ISSSDGQQQA IGAGLVYGPT SQTDPMASGI 240 QGTFSSFPPG SPGMGPPTLQ LPSSSAQRES MFPERPGQQE CQFYMKTGDC KFGMTCRYHH 300 PKERIIPIPN CVLNSLGLPL RPGAPACTFF SRYGICKFGP TCKFDHPMVH SSYSQSISSP 360 IDIPVGRHQI GSASATLASV PLSSDLVVDS GGGKSIEHTS TAEARQQSSG VENLGPDA

Sequence ? help Back to Top

Protein Sequence Length: 418 aa Download sequence Send to blast

XAGEPEIGSY PERPGEPDCT YYMRTGLCGF GMSCRFNHPP NRKQAAAAAR NKGEYPERLG  60
QPECQYYLKT GTCKFGATCK FHHPRDKAGS TGRAAINVLG YPLRPNEKEC AYYLRTGQCK  120
YGATCKFHHP PPVGPLVPVR GSSLFTPVQS PTTPGPQAYP GSLQTWPMQR ASFIQSPRWQ  180
GPSSYAPLIL PQGIVPVPSW STYPQGQVGS ISSSDGQQQA IGAGLVYGPT SQTDPMASGI  240
QGTFSSFPPG SPGMGPPTLQ LPSSSAQRES MFPERPGQQE CQFYMKTGDC KFGMTCRYHH  300
PKERIIPIPN CVLNSLGLPL RPGAPACTFF SRYGICKFGP TCKFDHPMVH SSYSQSISSP  360
IDIPVGRHQI GSASATLASV PLSSDLVVDS GGGKSIEHTS TAEARQQSSG VENLGPDA

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Pta.6063	0.0	needle\| root\| xylem

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006480413.1	0.0	zinc finger CCCH domain-containing protein ZFN-like isoform X1
Refseq	XP_024037223.1	0.0	zinc finger CCCH domain-containing protein ZFN-like
Refseq	XP_024955986.1	0.0	zinc finger CCCH domain-containing protein ZFN-like isoform X1
Refseq	XP_024955987.1	0.0	zinc finger CCCH domain-containing protein ZFN-like isoform X1
Swissprot	Q9SWF9	1e-167	ZFNL_PEA; Zinc finger CCCH domain-containing protein ZFN-like
TrEMBL	C0PR62	0.0	C0PR62_PICSI; Uncharacterized protein
STRING	XP_006480413.1	0.0	(Citrus sinensis)
STRING	XP_006428579.1	0.0	(Citrus clementina)