PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pta001316
Organism
Pinus taeda
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pinus; Pinus
Family bHLH
Protein Properties Length: 468aa    MW: 51917.7 Da    PI: 8.6649
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
gnl|UG|Pta#S26639743PU_unrefUnigeneView CDS
PUT-157a-Pinus_taeda-54693PU_refplantGDBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH42.31.4e-13308354455
                HHHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS
        HLH   4 ahnerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 
                +h e+Er+RR+++N++f  Lr ++P+ +      K++Ka+ L  A+ YI++Lq
  Pta001316 308 NHVEAERQRREKLNQRFYALRAVVPNiS------KMDKASLLGDAISYIQELQ 354
                799***********************66......******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF142155.3E-313119IPR025610Transcription factor MYC/MYB N-terminal
PROSITE profilePS5088817.58304353IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000834.82E-15307358No hitNo description
SuperFamilySSF474591.57E-19307373IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.106.6E-19308369IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000104.6E-11308354IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.0E-17310359IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 468 aa     Download sequence    Send to blast
RPGLQKLQSF FGGGGEEENN FVSGLDNVSD TEMFYLASMY YSFPRGIGVP GQALASGKCI  60
WLNEPSKLPS NLCSRAYLAK TGGIQTLVCL PMEHGVVEVG SVEMIRESKH AIDKVRSSFN  120
ENACDGNRGQ QAVKGSLVVP FPPNPMRVNA VNAKAAPPLK PSHDWKIFGQ ELSKSTEAVV  180
TKVEDRDRHY QPVFRPPYAH AASYVTNEQR IPYSTVNQNG LQPPNWSHIS NGEAGEIYNT  240
RDLIKPSRIL PLGVAGPSLN AVTARPSIME SEEHSDVEAS ERRPVVVEER RPRKRGRKPA  300
NGREEPLNHV EAERQRREKL NQRFYALRAV VPNISKMDKA SLLGDAISYI QELQSKVKDM  360
ETEREKQQQP QPQQAKSNIQ DGRIVDPISD IDVQMTTGEA TVRVSCAKES HPVGRVMLAL  420
QRLQLDVHHA NISAANENIL HTFVIKLGGT QTLTKDQLLE AISGWSPR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5gnj_A9e-30302364264Transcription factor MYC2
5gnj_B9e-30302364264Transcription factor MYC2
5gnj_E9e-30302364264Transcription factor MYC2
5gnj_F9e-30302364264Transcription factor MYC2
5gnj_G9e-30302364264Transcription factor MYC2
5gnj_I9e-30302364264Transcription factor MYC2
5gnj_M9e-30302364264Transcription factor MYC2
5gnj_N9e-30302364264Transcription factor MYC2
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1281298RRPVVVEERRPRKRGRKP
2289297RRPRKRGRK
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pta.29350.0shoot| xylem
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLB8LLA60.0B8LLA6_PICSI; Uncharacterized protein
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G01260.32e-77bHLH family protein