PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

Gene Ontology |

Expression |

Basic Information? help Back to Top

TF ID

Pta001116

Organism

Pinus taeda

Taxonomic ID

3352

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pinus; Pinus

Family

Trihelix

Protein Properties

Length: 519aa MW: 58586.8 Da PI: 6.2951

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PUT-157a-Pinus_taeda-48844	PU_ref	plantGDB	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	109.5	2.2e-34	227	312	1	87
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqlea 87 rW+k evlaLi++r+ m++r++++ k+plWee+s++m++ g++rs+k+Ckekwen+nk+ykk+ke++kkr +e+s+tcpyf ql+a Pta001116 227 RWPKPEVLALIKVRSGMGSRFQETGPKGPLWEEISSQMSALGYSRSSKRCKEKWENINKYYKKTKESNKKR-PENSKTCPYFYQLDA 312 8*******************************************************************8.9999******985 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00717	3.4E-4	224	286	IPR001005	SANT/Myb domain
Gene3D	G3DSA:1.10.10.60	7.6E-4	226	290	IPR009057	Homeodomain-like
Pfam	PF13837	8.4E-23	226	313	No hit	No description
CDD	cd12203	1.40E-30	226	291	No hit	No description
PROSITE profile	PS50090	7.689	227	284	IPR017877	Myb-like domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 519 aa Download sequence Send to blast
QLEALYSNNN NKPPQISNKA VNDASTIANG GDRVQAHADP TSTRQDEDHN NVGGNFMVGT 60 TSAGNTDLNS SEGISFSSDS SEDYDQPRDS NNKKRKRSGT KKLMAFFENL MKQMMEKQEK 120 MQQTFLEALE KREEDRMMRE EAWKRQEMAR LNKDQELRSQ ERSMAASRDL ALVSFLQKFT 180 GQTLQLDTQL MDSSQIHSQG DQEQEQEQDL HDEQYKDLNC TDPNSKRWPK PEVLALIKVR 240 SGMGSRFQET GPKGPLWEEI SSQMSALGYS RSSKRCKEKW ENINKYYKKT KESNKKRPEN 300 SKTCPYFYQL DALYRRGMMS NPHKMNQMHD EDLRPDDEDH QDELLEQVSG SNIRDDSGHG 360 QGADGTGDGE ILPVRPLPLP RPHSDSIAPP QTPTSNATVT LFSTPENRNA DNGSLPKDSV 420 KREGLLMKEI LGHMQTTPTP QHDPPSALET GSSGHNNIKK KVGLVHSVMN NLQEQGKKKQ 480 KQADLHYSAS TRDANSFMEM VQKLTAADTL DFNLSASSQ

Sequence ? help Back to Top

Protein Sequence Length: 519 aa Download sequence Send to blast

QLEALYSNNN NKPPQISNKA VNDASTIANG GDRVQAHADP TSTRQDEDHN NVGGNFMVGT  60
TSAGNTDLNS SEGISFSSDS SEDYDQPRDS NNKKRKRSGT KKLMAFFENL MKQMMEKQEK  120
MQQTFLEALE KREEDRMMRE EAWKRQEMAR LNKDQELRSQ ERSMAASRDL ALVSFLQKFT  180
GQTLQLDTQL MDSSQIHSQG DQEQEQEQDL HDEQYKDLNC TDPNSKRWPK PEVLALIKVR  240
SGMGSRFQET GPKGPLWEEI SSQMSALGYS RSSKRCKEKW ENINKYYKKT KESNKKRPEN  300
SKTCPYFYQL DALYRRGMMS NPHKMNQMHD EDLRPDDEDH QDELLEQVSG SNIRDDSGHG  360
QGADGTGDGE ILPVRPLPLP RPHSDSIAPP QTPTSNATVT LFSTPENRNA DNGSLPKDSV  420
KREGLLMKEI LGHMQTTPTP QHDPPSALET GSSGHNNIKK KVGLVHSVMN NLQEQGKKKQ  480
KQADLHYSAS TRDANSFMEM VQKLTAADTL DFNLSASSQ

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	86	95	PRDSNNKKRK
2	92	97	KKRKRS

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Pta.12039	1e-173	cone\| root\| xylem

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_024359363.1	1e-90	trihelix transcription factor GTL1-like
Refseq	XP_024402443.1	1e-90	trihelix transcription factor GTL1-like
TrEMBL	A0A0D6QXM9	1e-94	A0A0D6QXM9_ARACU; Uncharacterized protein
STRING	PP1S19_341V6.1	5e-90	(Physcomitrella patens)
STRING	PP1S85_58V6.1	4e-90	(Physcomitrella patens)