PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pta000924
Organism
Pinus taeda
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pinus; Pinus
Family MYB_related
Protein Properties Length: 668aa    MW: 75859 Da    PI: 7.0131
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
gnl|UG|Pta#S24904470PU_unrefUnigeneView CDS
PUT-157a-Pinus_taeda-8358PU_refplantGDBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding31.63.8e-10471511340
                      SS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHH CS
  Myb_DNA-binding   3 rWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqc 40 
                      rW++eE +ll ++v+++++g   +W+ Ia+++g+gRt +++
        Pta000924 471 RWSKEEIDLLRKGVQKYPKGtsqRWEVIANYIGTGRTVEEI 511
                      9************************************9886 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF465651.27E-2081175IPR001623DnaJ domain
PRINTSPR006254.1E-98199IPR001623DnaJ domain
Gene3DG3DSA:1.10.287.1106.0E-2193198IPR001623DnaJ domain
SMARTSM002716.6E-1596171IPR001623DnaJ domain
PfamPF002261.6E-1897176IPR001623DnaJ domain
CDDcd062573.48E-1497168IPR001623DnaJ domain
PROSITE profilePS5007618.53297179IPR001623DnaJ domain
PRINTSPR006254.1E-9120135IPR001623DnaJ domain
PRINTSPR006254.1E-9151171IPR001623DnaJ domain
PROSITE patternPS006360156175IPR018253DnaJ domain, conserved site
SuperFamilySSF466892.39E-8466512IPR009057Homeodomain-like
PROSITE profilePS512937.771467522IPR017884SANT domain
SMARTSM007172.0E-8468521IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.608.4E-7470512IPR009057Homeodomain-like
PfamPF002491.6E-8471511IPR001005SANT/Myb domain
CDDcd001671.84E-6471511No hitNo description
PROSITE profilePS512939.108607662IPR017884SANT domain
SMARTSM007171.0E-8608660IPR001005SANT/Myb domain
SuperFamilySSF466896.13E-9610657IPR009057Homeodomain-like
PfamPF002494.1E-6611655IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.605.9E-4611657IPR009057Homeodomain-like
CDDcd001671.22E-5611658No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 668 aa     Download sequence    Send to blast
MTILNNWPLL TYSAELEDGE PLFVSSNCLP VKAARLEPAG HSFHAAALYL LGYKEDTDDE  60
TDDKSESSEK DKGFTASYDS YRFKGKKKSA DGKEQQDHYA LLGLGHLRYL ATEDQIRKSY  120
REAALKYHPD KQASILLAEE TDEAKQSKKD EIESHFKIIQ EAYEVLMDPV KRRIYDSTDE  180
FDDEVPSDCA PQDFFKVFGP VFMRNSRWSV TQPIPSLGDE NTPIKEVDKF YDFWDSFKSW  240
REFPHADEFD LEQAESREHK RWMERQNAKL QEKAKKEEYA RIRSFVDNAY KRDPRILRRK  300
EEEKAEKLRK KEEKLQARRM KEEAAARIAE EERLRKEEEE KRAAEAALAQ KKSKEKEKKL  360
LRKERSRLRI AAASVVSKKL LGIVEDDVEK LCTSLEIDRL RILCEQLGQK GELEQAELLR  420
DALSGDPDGA KSIEKTVSQN DTAQGQTTSQ GPEGHGKTES LLNSYEKKER RWSKEEIDLL  480
RKGVQKYPKG TSQRWEVIAN YIGTGRTVEE ILKAIKTVLL QKPDTANSFD SFLERRKAAN  540
PITSPLSTRD EVGDSPTNGC VPSTVVGEKA KGVSEQQASG GSNQSADGKG SSGGGVRSVT  600
NGSVAGNDQD AWSAVQERAL IQALKTFPKE TPQRWERVAT AVPGKSKVQC MRKFAEMKEN  660
FRSKKSSD
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5dje_A7e-2019329620123Zuotin
5dje_B7e-2019329620123Zuotin
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1297320RRKEEEKAEKLRKKEEKLQARRMK
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pta.71440.0root| shoot| xylem
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010067661.10.0PREDICTED: dnaJ homolog subfamily C member 2
TrEMBLA0A0D6R2D90.0A0A0D6R2D9_ARACU; Uncharacterized protein
STRINGXP_010067661.10.0(Eucalyptus grandis)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G06110.21e-127DnaJ domain ;Myb-like DNA-binding domain