PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

Gene Ontology |

Basic Information? help Back to Top

TF ID

Psi011937

Organism

Picea sitchensis

Taxonomic ID

3332

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea

Family

C2H2

Protein Properties

Length: 375aa MW: 41749.9 Da PI: 9.2601

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
gnl\|UG\|Psi#S50071785	PU_unref	Unigene	View CDS
PUT-183a-Picea_sitchensis-17092	PU_ref	plantGDB	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	17.2	1.4e-05	184	207	1	23
EEETTTTEEESSHHHHHHHHHH.T CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirt.H 23 y Cp+Cg+ +s + L++H+ t H Psi011937 184 YACPICGEICSKCEALEQHQATkH 207 89******************9988 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE pattern	PS00028	0	186	207	IPR007087	Zinc finger, C2H2
SuperFamily	SSF56399	5.18E-16	209	369	No hit	No description
Gene3D	G3DSA:3.90.228.10	1.1E-13	210	371	IPR012317	Poly(ADP-ribose) polymerase, catalytic domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003950	Molecular Function	NAD+ ADP-ribosyltransferase activity
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 375 aa Download sequence Send to blast
MAQAKIFLKG FLALGVLILQ LLGCLFATAI TATKKRASEH KVSSWSSIKK FLTCKLDTNE 60 VHDPKKETKQ SLKKCYHNIG CSGSFYSLRD IVHGNTRVMH RPETSPENSS RSSQEIVVSD 120 HSRVSMGSST RSLASPKPQF TIHEAQGSFR GVHLRKFSGC YECHVIVDPF EAMSRDASLR 180 TTIYACPICG EICSKCEALE QHQATKHAVS ELAQDDSARN IVDIIFQTSW LKKETPCKIE 240 RVLKIHNSQR TINKFEDYRD MVKAKANKSA KKHPRCIADG NELLRFHSIT FTCSLGMDGL 300 TNLCNFPSCN VCNIIRHGFS SKVENGKGIY TTASSGKAHD SIEVSEEDES KEKRAMLVCR 360 VIAGRVKSPK TQTSV

Sequence ? help Back to Top

Protein Sequence Length: 375 aa Download sequence Send to blast

MAQAKIFLKG FLALGVLILQ LLGCLFATAI TATKKRASEH KVSSWSSIKK FLTCKLDTNE  60
VHDPKKETKQ SLKKCYHNIG CSGSFYSLRD IVHGNTRVMH RPETSPENSS RSSQEIVVSD  120
HSRVSMGSST RSLASPKPQF TIHEAQGSFR GVHLRKFSGC YECHVIVDPF EAMSRDASLR  180
TTIYACPICG EICSKCEALE QHQATKHAVS ELAQDDSARN IVDIIFQTSW LKKETPCKIE  240
RVLKIHNSQR TINKFEDYRD MVKAKANKSA KKHPRCIADG NELLRFHSIT FTCSLGMDGL  300
TNLCNFPSCN VCNIIRHGFS SKVENGKGIY TTASSGKAHD SIEVSEEDES KEKRAMLVCR  360
VIAGRVKSPK TQTSV

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010268701.1	1e-110	PREDICTED: uncharacterized protein LOC104605577
TrEMBL	B8LQN9	0.0	B8LQN9_PICSI; Uncharacterized protein
STRING	XP_010268701.1	1e-110	(Nelumbo nucifera)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G75710.1	5e-90	C2H2-like zinc finger protein