PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Psi006599
Organism
Picea sitchensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea
Family CO-like
Protein Properties Length: 419aa    MW: 45646 Da    PI: 5.3352
Description CO-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
gnl|UG|Psi#S41648849PU_refUnigeneView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box22.23e-073374439
   zf-B_box  4 rkCpeHeekelqlfCedCqqllCedClleeHkg.......Htv 39
               + C+ +    ++l+C+ ++ +lC  C ++ H g       H++
  Psi006599 33 KPCNVCRIASASLYCRADSAYLCSGCDVKVH-GanklasrHER 74
               68******99*********************.54677777775 PP
2zf-B_box26.21.7e-0875120342
   zf-B_box   3 erkCpeHeekelqlfCedCqqllCedClleeHkg......Htvvpl 42 
                 + C+ +e+ ++   C+ +   lC +C   +H+       H++vp+
  Psi006599  75 VWLCEVCEQAPAAVTCKADAASLCVSCDADIHSAnplarrHDRVPI 120
                689*****************************66899999*99997 PP
3CCT705.9e-24355398144
        CCT   1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqa 44 
                Rea++lRYkeKrk+RkFeK+irY+sRKa+Ae+RpR+KGrF+k+ 
  Psi006599 355 REARVLRYKEKRKNRKFEKTIRYASRKAYAETRPRIKGRFAKRV 398
                9****************************************985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003363.1E-103077IPR000315B-box-type zinc finger
PfamPF006431.1E-53374IPR000315B-box-type zinc finger
CDDcd000211.55E-63477No hitNo description
PROSITE profilePS501199.9113577IPR000315B-box-type zinc finger
PROSITE profilePS5011910.65173120IPR000315B-box-type zinc finger
PfamPF006431.8E-675120IPR000315B-box-type zinc finger
CDDcd000218.88E-976120No hitNo description
SMARTSM003361.7E-978120IPR000315B-box-type zinc finger
PROSITE profilePS5101716.638355397IPR010402CCT domain
PfamPF062035.9E-18355397IPR010402CCT domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005622Cellular Componentintracellular
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 419 aa     Download sequence    Send to blast
XRKVLSEMVK EEDCKVPKEA GIVKEFQAWT MPKPCNVCRI ASASLYCRAD SAYLCSGCDV  60
KVHGANKLAS RHERVWLCEV CEQAPAAVTC KADAASLCVS CDADIHSANP LARRHDRVPI  120
VPFYECASVA KTFLPPPPPP PTSSLQDSDV VGTLDYEDHD DDDEIYAAEA ASWLLPNPKS  180
SAEGTKNCDD GGSCFGVDAG PPVNKAAGGY FSVVDLFPDV DPYLDLDYAS PLEATGGTDS  240
VVPVQSNVSS QDGAVSTPSD CFDTEKVTYS YTTTTSLSHS VSPCKTAFET IPLSIRXNLI  300
KIPPLFYRSS SSSLDVGVVP DATLSDMPRP LNRGVFELAN PGVVNVGIQY VQLDREARVL  360
RYKEKRKNRK FEKTIRYASR KAYAETRPRI KGRFAKRVDA DVAQMYTSAE LSYGLVPSF
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010259762.11e-99PREDICTED: zinc finger protein CONSTANS-LIKE 5-like
TrEMBLD5JCV20.0D5JCV2_PICLI; Putative constans-like protein (Fragment)
STRINGXP_010259762.14e-99(Nelumbo nucifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G02380.15e-75CONSTANS-like 2