PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

Gene Ontology |

Basic Information? help Back to Top

TF ID

Psi004602

Organism

Picea sitchensis

Taxonomic ID

3332

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea

Family

C2H2

Protein Properties

Length: 206aa MW: 22959.9 Da PI: 4.236

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
gnl\|UG\|Psi#S50071660	PU_unref	Unigene	View CDS
PUT-183a-Picea_sitchensis-8791	PU_ref	plantGDB	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	14.8	8.1e-05	45	70	1	23
EEET..TTTEEESSHHHHHHHHHH.T CS zf-C2H2 1 ykCp..dCgksFsrksnLkrHirt.H 23 + Cp C+k++ + + L+ H+r+ H Psi004602 45 FACPydGCDKCYIHEYKLNLHLRReH 70 78**********************99 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF57667	2.41E-5	41	68	No hit	No description
Gene3D	G3DSA:3.30.160.60	8.4E-8	42	67	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profile	PS50157	9.099	45	72	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	47	70	IPR007087	Zinc finger, C2H2

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003676	Molecular Function	nucleic acid binding
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 206 aa Download sequence Send to blast
XPHIKSTHEK NLANAVKLPP QNEREFLHPK VPTSVYGSVP SDRPFACPYD GCDKCYIHEY 60 KLNLHLRREH AGYAFEENGR HGSDSEDEMD QGSDQDGNGR NAGIMTGSGR GRLRVTSKTS 120 SATNLHRKFM NAAAVDSNTK TSSRAIVESK EPGKGHPRED SEETEDQEDT DNEGWGHGTE 180 TDDDDEDDND DDDDDADEEE TEDDMD

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011629428.1	1e-37	uncharacterized zinc finger protein At4g06634 isoform X4
TrEMBL	B8LR03	9e-76	B8LR03_PICSI; Uncharacterized protein
STRING	ERM97843	1e-37	(Amborella trichopoda)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G06634.2	8e-22	C2H2 family protein