PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

Basic Information? help Back to Top

TF ID

Psi003246

Organism

Picea sitchensis

Taxonomic ID

3332

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea

Family

BBR-BPC

Protein Properties

Length: 282aa MW: 30538.7 Da PI: 6.8839

Description

BBR-BPC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
gnl\|UG\|Psi#S55421850	PU_ref	Unigene	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GAGA_bind	266.5	1.4e-81	1	282	1	289
GAGA_bind 1 mdddgsre.rnkgyyepaaslkenlglqlmssiaerdakirernlalsekkaavaerdmaflqrdkalaernkalverdnkllalllvensla.salpvg 98 m+ d+ + r +g e++ k++ +l+lm++iaerd +i er++a++ekkaa+aerd+a+lqr+ a+++rn al+erd +++al + + + ++ Psi003246 1 MEGDSALDiRDWGTCEES--TKDHPALKLMAVIAERDVAILERDTAIAEKKAAYAERDVALLQREVAISDRNSALLERDAAAAALGYSGHINLtGQRGPL 98 788888899**77766..899************************************************************9986554677888 PP GAGA_bind 99 vqvlsgtksidslqqlsepqledsavelreeeklealpieeaaeeakekkkkkkrqrakkpkekkakkkkkksekskkkvkkesaderskaekksidlvl 198 +++l g k q+ + +v + + +++++a +++k +k++ +++ + + +k +++ ++ +++++ +k+ekk++d + Psi003246 99 CGTLVGIKVQTVGQT------FPAPVS-EALLAEQPKQTNQADNNIKGQKEPPSNKVFNGCELITPVRKIQQNMGDTTGQETNGLLAVVKHEKKDQDYTE 191 888888876665555......222222.112222334445555666666666655555544444444444445555556666666688******** PP GAGA_bind 199 ngvslDestlPvPvCsCtGalrqCYkWGnGGWqSaCCtttiSvyPLPvstkrrgaRiagrKmSqgafkklLekLaaeGydlsnpvDLkdhW 289 n++++D+s+lP+PvCsCtG+++qCY+WG+GGWqSaCCtt+iS+yPLP ++++rgaR++grKmS+gaf klL++L a+Gy+l pvDLk+hW Psi003246 192 NKITFDTSALPIPVCSCTGVPQQCYRWGSGGWQSACCTTSISIYPLPLNPNKRGARLGGRKMSGGAFAKLLARLIADGYSLEYPVDLKNHW 282 ***************************************************************************************** PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM01226	3.5E-80	1	282	IPR010409	GAGA-binding transcriptional activator
Pfam	PF06217	5.3E-74	1	282	IPR010409	GAGA-binding transcriptional activator

Sequence ? help Back to Top
Protein Sequence Length: 282 aa Download sequence Send to blast
MEGDSALDIR DWGTCEESTK DHPALKLMAV IAERDVAILE RDTAIAEKKA AYAERDVALL 60 QREVAISDRN SALLERDAAA AALGYSGHIN LTGQRGPLCG TLVGIKVQTV GQTFPAPVSE 120 ALLAEQPKQT NQADNNIKGQ KEPPSNKVFN GCELITPVRK IQQNMGDTTG QETNGLLAVV 180 KHEKKDQDYT ENKITFDTSA LPIPVCSCTG VPQQCYRWGS GGWQSACCTT SISIYPLPLN 240 PNKRGARLGG RKMSGGAFAK LLARLIADGY SLEYPVDLKN HW

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006852993.3	5e-79	LOW QUALITY PROTEIN: barley B recombinant-like protein D
TrEMBL	D5A988	0.0	D5A988_PICSI; GAGA-binding transcriptional activator
STRING	Aquca_006_00158.1	2e-71	(Aquilegia coerulea)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G42520.2	2e-63	basic pentacysteine 6