PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Psi002554
Organism
Picea sitchensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea
Family BBR-BPC
Protein Properties Length: 334aa    MW: 37024.1 Da    PI: 8.8431
Description BBR-BPC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
gnl|UG|Psi#S50071548PU_unrefUnigeneView CDS
PUT-183a-Picea_sitchensis-4034PU_refplantGDBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GAGA_bind245.92.7e-752133418301
  GAGA_bind  18 aslkenlglqlmssiaerdakirernlalsekkaavaerdmaflqrdkalaernkalverdnkllalllvensla.............salpvgvqv... 101
                + lk+   l+l+s  +erda irer+ a++ekk a+ae++ a++qrd+a+a+r++a++erd +++al+ ++++ +              a+p+ +q+   
  Psi002554  21 KCLKDYAMLRLISAKTERDAVIRERDKAIAEKKVAIAEKEAAYAQRDAAFAQRDEAIMERDAAFAALENARDERNrgwqaykaqlaqmAASPHLTQIgac 120
                678999999***********************************************************99998887888888888776444444443111 PP

  GAGA_bind 102 lsgtksidslqqlse.............pqledsave.....lreeeklealpieeaaeea.kekkkkkkrqrakkpkekkakkkkkksekskkkvkkes 182
                +++ +  + ++ + +                +  + e       e   +++ +i++ ++++ +++kk+++   ++ p+++k+ +kk++ + +  ++++++
  Psi002554 121 SRDPRIFQAINIH-HdctygiganefpaL--TTGTSElgpvlECEAALKSSSEIVTREPKKgRRSKKNSQDVDGSIPLVPKSPSKKRRVRGQ--QSETPN 215
                3333444444443.358888887777442..3222221021122333334444544444430444555555566778888877777744444..333333 PP

  GAGA_bind 183 aderskaekksidlvlngvslDestlPvPvCsCtGalrqCYkWGnGGWqSaCCtttiSvyPLPvstkrrgaRiagrKmSqgafkklLekLaaeGydlsnp 282
                  e   + k++ + +     + + ++P+P CsCtGa + CY+WGnGGWqSaCCtt +S+yPLP++++++g R  grKmS gaf+klL +L+ +G d+ +p
  Psi002554 216 GVEVGSEGKDCENNSAKSCVVYNPSMPIPYCSCTGANQPCYRWGNGGWQSACCTTMMSMYPLPMNPNKKGYRFPGRKMSAGAFQKLLVRLSLQGIDVTKP 315
                2244556666777777777788889*************************************************************************** PP

  GAGA_bind 283 vDLkdhWAkHGtnkfvtir 301
                +DLk+hWAkHGtn++vti+
  Psi002554 316 IDLKEHWAKHGTNRYVTIK 334
                ******************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM012269.9E-631334IPR010409GAGA-binding transcriptional activator
PfamPF062173.1E-6728334IPR010409GAGA-binding transcriptional activator
Sequence ? help Back to Top
Protein Sequence    Length: 334 aa     Download sequence    Send to blast
MDDEDRKGVH PALNDEPLDE KCLKDYAMLR LISAKTERDA VIRERDKAIA EKKVAIAEKE  60
AAYAQRDAAF AQRDEAIMER DAAFAALENA RDERNRGWQA YKAQLAQMAA SPHLTQIGAC  120
SRDPRIFQAI NIHHDCTYGI GANEFPALTT GTSELGPVLE CEAALKSSSE IVTREPKKGR  180
RSKKNSQDVD GSIPLVPKSP SKKRRVRGQQ SETPNGVEVG SEGKDCENNS AKSCVVYNPS  240
MPIPYCSCTG ANQPCYRWGN GGWQSACCTT MMSMYPLPMN PNKKGYRFPG RKMSAGAFQK  300
LLVRLSLQGI DVTKPIDLKE HWAKHGTNRY VTIK
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Psi.4040.0shoot
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLB8LRA80.0B8LRA8_PICSI; GAGA-binding transcriptional activator
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G42520.24e-46basic pentacysteine 6