PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Psi002004
Organism
Picea sitchensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea
Family CO-like
Protein Properties Length: 384aa    MW: 41585.6 Da    PI: 4.74
Description CO-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
gnl|UG|Psi#S41649162PU_unrefUnigeneView CDS
PUT-183a-Picea_sitchensis-4757PU_refplantGDBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box22.32.7e-072667439
   zf-B_box  4 rkCpeHeekelqlfCedCqqllCedClleeHkg.......Htv 39
               + C+ +    ++l+C+ ++ +lC  C ++ H g       H++
  Psi002004 26 KPCNVCRIASASLYCRADSAYLCSGCDVKVH-GanklasrHER 67
               68******99*********************.54677777775 PP
2zf-B_box26.31.5e-0868113342
   zf-B_box   3 erkCpeHeekelqlfCedCqqllCedClleeHkg......Htvvpl 42 
                 + C+ +e+ ++   C+ +   lC +C   +H+       H++vp+
  Psi002004  68 VWLCEVCEQAPAAVTCKADAASLCVSCDADIHSAnplarrHDRVPI 113
                689*****************************66899999*99997 PP
3CCT70.25.2e-24320363144
        CCT   1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqa 44 
                Rea++lRYkeKrk+RkFeK+irY+sRKa+Ae+RpR+KGrF+k+ 
  Psi002004 320 REARVLRYKEKRKNRKFEKTIRYASRKAYAETRPRIKGRFAKRV 363
                9****************************************985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003363.1E-102370IPR000315B-box-type zinc finger
PfamPF006431.0E-52667IPR000315B-box-type zinc finger
CDDcd000211.77E-62770No hitNo description
PROSITE profilePS501199.9112870IPR000315B-box-type zinc finger
PROSITE profilePS5011910.65166113IPR000315B-box-type zinc finger
PfamPF006431.6E-668113IPR000315B-box-type zinc finger
CDDcd000211.04E-869113No hitNo description
SMARTSM003361.7E-971113IPR000315B-box-type zinc finger
PROSITE profilePS5101716.638320362IPR010402CCT domain
PfamPF062035.2E-18320362IPR010402CCT domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005622Cellular Componentintracellular
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 384 aa     Download sequence    Send to blast
MVKEEDCKVP KEAGIVKEFQ AWTMPKPCNV CRIASASLYC RADSAYLCSG CDVKVHGANK  60
LASRHERVWL CEVCEQAPAA VTCKADAASL CVSCDADIHS ANPLARRHDR VPIVPFYECA  120
SVAKTFLPPP PPPPTSSLQD SDVVGTLDYE DDDDDDEIYA AEAASWLLPN PKSSAEGTKN  180
CDDGGSCFGV DAGPPVNKAA GGYFSVVDLF PDVDPYLDLD YASPLEATGG TDSVVPVQSN  240
VSSQDGAVST PSDCFDTEKV TYSYTTTTSL SHSVSSSSLD VGVVPDATLS DMPRPLNRGV  300
FELANPGVVN VGIQYVQLDR EARVLRYKEK RKNRKFEKTI RYASRKAYAE TRPRIKGRFA  360
KRVDADVAQM YTSAELSYGL VPSF
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Psi.36920.0needle| shoot
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006845571.11e-104zinc finger protein CONSTANS-LIKE 4
TrEMBLA9NVC40.0A9NVC4_PICSI; Uncharacterized protein
STRINGERN072461e-104(Amborella trichopoda)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G24930.11e-78CONSTANS-like 4