PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Prupe.8G268900.1.p | ||||||||
Common Name | PRUPE_ppa013280mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
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Family | GATA | ||||||||
Protein Properties | Length: 132aa MW: 14343.6 Da PI: 10.3953 | ||||||||
Description | GATA family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GATA | 61 | 1.5e-19 | 25 | 58 | 1 | 34 |
GATA 1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkg 34 C+ C+tt+TplWR gp g++tLCnaCG++yrk++ Prupe.8G268900.1.p 25 CTDCHTTTTPLWRGGPAGPRTLCNACGIKYRKRK 58 ********************************87 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00401 | 7.9E-16 | 19 | 70 | IPR000679 | Zinc finger, GATA-type |
PROSITE profile | PS50114 | 13.521 | 19 | 55 | IPR000679 | Zinc finger, GATA-type |
SuperFamily | SSF57716 | 1.05E-13 | 22 | 59 | No hit | No description |
Gene3D | G3DSA:3.30.50.10 | 7.6E-16 | 23 | 59 | IPR013088 | Zinc finger, NHR/GATA-type |
CDD | cd00202 | 1.49E-14 | 24 | 59 | No hit | No description |
PROSITE pattern | PS00344 | 0 | 25 | 50 | IPR000679 | Zinc finger, GATA-type |
Pfam | PF00320 | 3.6E-17 | 25 | 58 | IPR000679 | Zinc finger, GATA-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0048527 | Biological Process | lateral root development | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0008270 | Molecular Function | zinc ion binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 132 aa Download sequence Send to blast |
MDQRQKGSEA EHMNQSSIAP PSKSCTDCHT TTTPLWRGGP AGPRTLCNAC GIKYRKRKRA 60 LVGLNKGATG TERRKHKTTG APLKLGLKSM EREMVEMVFH FHKRKLKEEE EAAILLMALS 120 CSSGTGGAVY A* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Prupe.8G268900.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_008235171.1 | 5e-92 | PREDICTED: GATA transcription factor 23-like | ||||
TrEMBL | M5VMQ3 | 4e-92 | M5VMQ3_PRUPE; Uncharacterized protein | ||||
STRING | EMJ02469 | 6e-93 | (Prunus persica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1569 | 32 | 98 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G49300.1 | 2e-18 | GATA transcription factor 16 |
Link Out ? help Back to Top | |
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Phytozome | Prupe.8G268900.1.p |
Entrez Gene | 18766489 |