PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Prupe.8G243500.6.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
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Family | bHLH | ||||||||
Protein Properties | Length: 324aa MW: 36323.9 Da PI: 4.439 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 15.9 | 2.4e-05 | 204 | 247 | 7 | 55 |
HHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 7 erErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +r RR ri ++++ LrellP + + a ++ ++++Ik Lq Prupe.8G243500.6.p 204 VTDRTRRMRIAERLDALRELLPIS-----TEGGQAFVVDDVIDHIKFLQ 247 678*******************97.....34445666666666666665 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50888 | 10.614 | 197 | 246 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 2.62E-8 | 203 | 254 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 5.8E-5 | 204 | 253 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 2.24E-5 | 207 | 251 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 324 aa Download sequence Send to blast |
MEGQSSLTDP MQLVPLDFCG DAAIDVSQAT GDDPSQQVIM AAEGTAYQTD DLFSPWWTEK 60 PKPSLDSLNY VEFQAESSTF LPKDRSEDIL ESIPLSVSGI DDVGGVSEFQ REVLYSSLRN 120 ACGSKLTDFS MDMDEWKVRC LRPVNDELVN AQHQLHAKYH TSRTDNLCGD KKDSVSQVDP 180 RARSALPDFH SQPHCHISTQ RAAVTDRTRR MRIAERLDAL RELLPISTEG GQAFVVDDVI 240 DHIKFLQLQI KDLCRSRLGG ETITEPIIFR EGYGHYFCHQ NMLNEPLEEM MGKLLETNPM 300 AASQLLENKD LLLLPMDYSE PLA* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Prupe.8G243500.6.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020426381.1 | 0.0 | uncharacterized protein LOC109950749 isoform X2 | ||||
TrEMBL | A0A251N4X5 | 0.0 | A0A251N4X5_PRUPE; Uncharacterized protein | ||||
STRING | XP_008355451.1 | 1e-126 | (Malus domestica) | ||||
STRING | XP_008368858.1 | 1e-126 | (Malus domestica) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G24260.1 | 4e-18 | LJRHL1-like 1 |
Link Out ? help Back to Top | |
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Phytozome | Prupe.8G243500.6.p |