PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Prupe.8G228700.1.p
Organism
Prunus persica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
Family bHLH
Protein Properties Length: 500aa    MW: 55369.6 Da    PI: 5.7054
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Prupe.8G228700.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH39.78.7e-13353399455
                         HHHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS
                 HLH   4 ahnerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 
                         +h e+Er+RR+++N++f  Lr ++P+ +      K++Ka+ L  A+ YI +Lq
  Prupe.8G228700.1.p 353 NHVEAERQRREKLNQRFYALRAVVPNiS------KMDKASLLGDAITYITDLQ 399
                         799***********************66......*****************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF142157.1E-4349232IPR025610Transcription factor MYC/MYB N-terminal
PROSITE profilePS5088816.831349398IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.62E-14352403No hitNo description
SuperFamilySSF474592.49E-18352418IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.9E-10353399IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.4E-18353418IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003535.4E-14355404IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 500 aa     Download sequence    Send to blast
MGEKFWVNEE DRVMVESVLG TEACQFLTSL VSENVLTDLV RPPGKLGVQQ GMSQLVKGSN  60
WNYAIFWQVV GSKSGGSALI WGDGHCRDTK DGGVAGENSS LDGSFVGVQK KEEVKKWVLE  120
KLHTCFGGLD EGYARRLDGV SDVEMFYLTS MYYAFQLDSH SGPGESYKSG KSIWVSDVGG  180
CLHHYQSRSY LARLAGFQTV VFVPMKSGVV ELGSVKANPE EQNLVNMVRN LFGESSSVQA  240
KAFPMIFGRE LSLGGPKSQS INIAFSPKIE EDSTFPPESF ELQSVGTSNG CQSEDSEVKL  300
FPQLNQMMVG GFSAPTIVSS LELPKDESSA QIDERKPRKR GRKPANGREE PLNHVEAERQ  360
RREKLNQRFY ALRAVVPNIS KMDKASLLGD AITYITDLQM KIRVMETENQ MGNNNQKQFP  420
VPEIDFQERH EDAVVRMNCP LDSHPVSEVI KTLREHKIVA QESNVSITDN DKVIHTFSIP  480
TQGGDAEQLK EKLVVSLSK*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5gnj_A7e-28347408263Transcription factor MYC2
5gnj_B7e-28347408263Transcription factor MYC2
5gnj_E7e-28347408263Transcription factor MYC2
5gnj_F7e-28347408263Transcription factor MYC2
5gnj_G7e-28347408263Transcription factor MYC2
5gnj_I7e-28347408263Transcription factor MYC2
5gnj_M7e-28347408263Transcription factor MYC2
5gnj_N7e-28347408263Transcription factor MYC2
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1334342RKPRKRGRK
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that negatively regulates jasmonate (JA) signaling (PubMed:30610166). Negatively regulates JA-dependent response to wounding, JA-induced expression of defense genes, JA-dependent responses against herbivorous insects, and JA-dependent resistance against Botrytis cinerea infection (PubMed:30610166). Plays a positive role in resistance against the bacterial pathogen Pseudomonas syringae pv tomato DC3000 (PubMed:30610166). {ECO:0000269|PubMed:30610166}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00099PBMTransfer from AT4G16430Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapPrupe.8G228700.1.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by wounding, feeding with herbivorous insects, infection with the fungal pathogen Botrytis cinerea and infection with the bacterial pathogen Pseudomonas syringae pv tomato DC3000. {ECO:0000269|PubMed:30610166}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKP6894060.0KP689406.1 Prunus pseudocerasus isolate Unigene16868 bHLH transcription factor mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020425946.10.0transcription factor bHLH3 isoform X1
SwissprotA0A3Q7H2160.0MTB3_SOLLC; Transcription factor MTB3
TrEMBLA0A251N2040.0A0A251N204_PRUPE; Uncharacterized protein
STRINGXP_008235723.10.0(Prunus mume)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF82633445
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G16430.11e-173bHLH family protein
Publications ? help Back to Top
  1. Tomato Genome Consortium
    The tomato genome sequence provides insights into fleshy fruit evolution.
    Nature, 2012. 485(7400): p. 635-41
    [PMID:22660326]
  2. Sun H,Fan HJ,Ling HQ
    Genome-wide identification and characterization of the bHLH gene family in tomato.
    BMC Genomics, 2015. 16: p. 9
    [PMID:25612924]
  3. Liu Y, et al.
    MYC2 Regulates the Termination of Jasmonate Signaling via an Autoregulatory Negative Feedback Loop.
    Plant Cell, 2019. 31(1): p. 106-127
    [PMID:30610166]